Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09950

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_09940 and OKFHMN_09945 are separated by 2 nucleotidesOKFHMN_09945 and OKFHMN_09950 overlap by 4 nucleotidesOKFHMN_09950 and OKFHMN_09955 are separated by 184 nucleotides OKFHMN_09940: OKFHMN_09940 - Peptidoglycan-binding protein LysM, at 1,859,980 to 1,860,576 _09940 OKFHMN_09945: OKFHMN_09945 - hypothetical protein, at 1,860,579 to 1,861,028 _09945 OKFHMN_09950: OKFHMN_09950 - hypothetical protein, at 1,861,025 to 1,861,321 _09950 OKFHMN_09955: OKFHMN_09955 - Uncharacterized lipoprotein YafT, at 1,861,506 to 1,862,306 _09955 Position (kb) 1861 1862Strain fitness (log2 ratio) -2 -1 0 1at 1860.061 kb on - strand, within OKFHMN_09940at 1860.249 kb on + strand, within OKFHMN_09940at 1860.294 kb on + strand, within OKFHMN_09940at 1860.295 kb on - strand, within OKFHMN_09940at 1860.496 kb on + strand, within OKFHMN_09940at 1860.663 kb on - strand, within OKFHMN_09945at 1860.842 kb on + strand, within OKFHMN_09945at 1860.928 kb on + strand, within OKFHMN_09945at 1861.774 kb on - strand, within OKFHMN_09955at 1861.799 kb on - strand, within OKFHMN_09955at 1862.152 kb on - strand, within OKFHMN_09955

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,860,061 - OKFHMN_09940 0.14 -0.1
1,860,249 + OKFHMN_09940 0.45 -1.0
1,860,294 + OKFHMN_09940 0.53 -0.7
1,860,295 - OKFHMN_09940 0.53 -2.2
1,860,496 + OKFHMN_09940 0.86 -0.7
1,860,663 - OKFHMN_09945 0.19 -0.7
1,860,842 + OKFHMN_09945 0.58 -0.6
1,860,928 + OKFHMN_09945 0.78 -0.5
1,861,774 - OKFHMN_09955 0.33 -0.1
1,861,799 - OKFHMN_09955 0.37 +0.3
1,862,152 - OKFHMN_09955 0.81 +0.3

Or see this region's nucleotide sequence