Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09695

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfrsA and gpt are separated by 91 nucleotidesgpt and pepD are separated by 260 nucleotides OKFHMN_09690: frsA - esterase FrsA, at 1,804,978 to 1,806,222 frsA OKFHMN_09695: gpt - xanthine phosphoribosyltransferase, at 1,806,314 to 1,806,772 gpt OKFHMN_09700: pepD - cytosol nonspecific dipeptidase, at 1,807,033 to 1,808,490 pepD Position (kb) 1806 1807Strain fitness (log2 ratio) -3 -2 -1 0 1at 1805.373 kb on - strand, within frsAat 1805.373 kb on - strand, within frsAat 1805.446 kb on + strand, within frsAat 1805.583 kb on - strand, within frsAat 1805.591 kb on + strand, within frsAat 1805.591 kb on + strand, within frsAat 1805.592 kb on - strand, within frsAat 1805.629 kb on + strand, within frsAat 1805.632 kb on + strand, within frsAat 1805.665 kb on - strand, within frsAat 1805.753 kb on + strand, within frsAat 1805.753 kb on + strand, within frsAat 1805.754 kb on - strand, within frsAat 1805.829 kb on - strand, within frsAat 1805.829 kb on - strand, within frsAat 1805.967 kb on - strand, within frsAat 1805.969 kb on - strand, within frsAat 1806.006 kb on + strand, within frsAat 1806.006 kb on + strand, within frsAat 1806.007 kb on - strand, within frsAat 1806.007 kb on - strand, within frsAat 1806.069 kb on + strand, within frsAat 1806.155 kb on - strandat 1806.178 kb on - strandat 1806.178 kb on - strandat 1806.255 kb on - strandat 1806.255 kb on - strandat 1806.255 kb on - strandat 1806.316 kb on - strandat 1806.586 kb on - strand, within gptat 1806.586 kb on - strand, within gptat 1806.595 kb on + strand, within gptat 1806.797 kb on + strandat 1806.827 kb on - strandat 1806.942 kb on - strandat 1806.942 kb on - strandat 1806.998 kb on + strandat 1806.998 kb on + strandat 1807.029 kb on + strandat 1807.030 kb on - strandat 1807.030 kb on - strandat 1807.136 kb on - strandat 1807.136 kb on - strandat 1807.188 kb on - strand, within pepDat 1807.191 kb on + strand, within pepDat 1807.192 kb on - strand, within pepDat 1807.192 kb on - strand, within pepDat 1807.317 kb on + strand, within pepDat 1807.327 kb on + strand, within pepDat 1807.328 kb on - strand, within pepDat 1807.329 kb on + strand, within pepDat 1807.330 kb on - strand, within pepDat 1807.330 kb on - strand, within pepDat 1807.347 kb on + strand, within pepDat 1807.496 kb on + strand, within pepDat 1807.522 kb on - strand, within pepDat 1807.649 kb on + strand, within pepD

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,805,373 - frsA OKFHMN_09690 0.32 -0.7
1,805,373 - frsA OKFHMN_09690 0.32 +0.2
1,805,446 + frsA OKFHMN_09690 0.38 +0.4
1,805,583 - frsA OKFHMN_09690 0.49 -0.0
1,805,591 + frsA OKFHMN_09690 0.49 +0.0
1,805,591 + frsA OKFHMN_09690 0.49 -0.1
1,805,592 - frsA OKFHMN_09690 0.49 -0.1
1,805,629 + frsA OKFHMN_09690 0.52 -0.1
1,805,632 + frsA OKFHMN_09690 0.53 -2.3
1,805,665 - frsA OKFHMN_09690 0.55 -0.2
1,805,753 + frsA OKFHMN_09690 0.62 +0.1
1,805,753 + frsA OKFHMN_09690 0.62 -0.1
1,805,754 - frsA OKFHMN_09690 0.62 -0.3
1,805,829 - frsA OKFHMN_09690 0.68 +0.9
1,805,829 - frsA OKFHMN_09690 0.68 -1.5
1,805,967 - frsA OKFHMN_09690 0.79 -0.6
1,805,969 - frsA OKFHMN_09690 0.80 +0.0
1,806,006 + frsA OKFHMN_09690 0.83 +0.6
1,806,006 + frsA OKFHMN_09690 0.83 +0.5
1,806,007 - frsA OKFHMN_09690 0.83 -1.5
1,806,007 - frsA OKFHMN_09690 0.83 +0.6
1,806,069 + frsA OKFHMN_09690 0.88 -0.1
1,806,155 - -0.3
1,806,178 - +0.3
1,806,178 - -1.6
1,806,255 - -0.4
1,806,255 - +0.1
1,806,255 - -1.1
1,806,316 - +0.2
1,806,586 - gpt OKFHMN_09695 0.59 +0.0
1,806,586 - gpt OKFHMN_09695 0.59 -0.2
1,806,595 + gpt OKFHMN_09695 0.61 +0.2
1,806,797 + -0.5
1,806,827 - +0.1
1,806,942 - +0.6
1,806,942 - +0.5
1,806,998 + +0.6
1,806,998 + -1.0
1,807,029 + +0.1
1,807,030 - -0.5
1,807,030 - -0.1
1,807,136 - -0.0
1,807,136 - +0.2
1,807,188 - pepD OKFHMN_09700 0.11 -1.1
1,807,191 + pepD OKFHMN_09700 0.11 -0.9
1,807,192 - pepD OKFHMN_09700 0.11 -0.5
1,807,192 - pepD OKFHMN_09700 0.11 -2.0
1,807,317 + pepD OKFHMN_09700 0.19 -0.5
1,807,327 + pepD OKFHMN_09700 0.20 +0.4
1,807,328 - pepD OKFHMN_09700 0.20 +0.6
1,807,329 + pepD OKFHMN_09700 0.20 -3.4
1,807,330 - pepD OKFHMN_09700 0.20 -0.2
1,807,330 - pepD OKFHMN_09700 0.20 -0.3
1,807,347 + pepD OKFHMN_09700 0.22 +0.1
1,807,496 + pepD OKFHMN_09700 0.32 -0.9
1,807,522 - pepD OKFHMN_09700 0.34 +0.7
1,807,649 + pepD OKFHMN_09700 0.42 -0.1

Or see this region's nucleotide sequence