Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09620

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_09610 and ymfM are separated by 9 nucleotidesymfM and ymfL overlap by 4 nucleotidesymfL and OKFHMN_09625 overlap by 8 nucleotidesOKFHMN_09625 and OKFHMN_09630 are separated by 97 nucleotides OKFHMN_09610: OKFHMN_09610 - helix-turn-helix domain-containing protein, at 1,793,849 to 1,794,790 _09610 OKFHMN_09615: ymfM - Uncharacterized protein YmfM, at 1,794,800 to 1,795,138 ymfM OKFHMN_09620: ymfL - Uncharacterized protein YmfL, at 1,795,135 to 1,795,686 ymfL OKFHMN_09625: OKFHMN_09625 - XRE family transcriptional regulator, at 1,795,679 to 1,795,939 _09625 OKFHMN_09630: OKFHMN_09630 - transcriptional regulator, at 1,796,037 to 1,796,729 _09630 Position (kb) 1795 1796Strain fitness (log2 ratio) -2 -1 0 1at 1794.368 kb on + strand, within OKFHMN_09610at 1794.575 kb on - strand, within OKFHMN_09610at 1794.691 kb on + strand, within OKFHMN_09610at 1794.715 kb on + strandat 1794.768 kb on + strandat 1794.768 kb on + strandat 1794.768 kb on + strandat 1794.768 kb on + strandat 1794.769 kb on - strandat 1794.769 kb on - strandat 1794.781 kb on + strandat 1794.801 kb on + strandat 1794.801 kb on + strandat 1795.019 kb on + strand, within ymfMat 1795.053 kb on + strand, within ymfMat 1795.059 kb on + strand, within ymfMat 1795.127 kb on + strandat 1795.203 kb on + strand, within ymfLat 1795.555 kb on + strand, within ymfLat 1795.555 kb on + strand, within ymfLat 1795.570 kb on + strand, within ymfL

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,794,368 + OKFHMN_09610 0.55 -0.3
1,794,575 - OKFHMN_09610 0.77 -1.7
1,794,691 + OKFHMN_09610 0.89 +0.8
1,794,715 + +0.1
1,794,768 + +0.2
1,794,768 + +1.1
1,794,768 + +1.3
1,794,768 + +0.6
1,794,769 - -1.3
1,794,769 - +1.0
1,794,781 + -0.3
1,794,801 + +1.0
1,794,801 + +0.3
1,795,019 + ymfM OKFHMN_09615 0.65 -1.5
1,795,053 + ymfM OKFHMN_09615 0.75 -0.2
1,795,059 + ymfM OKFHMN_09615 0.76 +0.7
1,795,127 + -1.1
1,795,203 + ymfL OKFHMN_09620 0.12 +0.1
1,795,555 + ymfL OKFHMN_09620 0.76 -1.9
1,795,555 + ymfL OKFHMN_09620 0.76 +1.0
1,795,570 + ymfL OKFHMN_09620 0.79 +1.5

Or see this region's nucleotide sequence