Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09135

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglxA and OKFHMN_09135 are separated by 120 nucleotidesOKFHMN_09135 and OKFHMN_09140 are separated by 0 nucleotides OKFHMN_09130: glxA - AraC family transcriptional regulator, at 1,713,841 to 1,714,698 glxA OKFHMN_09135: OKFHMN_09135 - Bacterial group 1 Ig-like protein, at 1,714,819 to 1,715,619 _09135 OKFHMN_09140: OKFHMN_09140 - Bacterial Ig-like domain, group 1, at 1,715,620 to 1,717,095 _09140 Position (kb) 1714 1715 1716Strain fitness (log2 ratio) -2 -1 0 1at 1713.998 kb on - strand, within glxAat 1713.998 kb on - strand, within glxAat 1714.273 kb on + strand, within glxAat 1714.273 kb on + strand, within glxAat 1714.499 kb on - strand, within glxAat 1714.499 kb on - strand, within glxAat 1714.709 kb on - strandat 1714.815 kb on - strandat 1714.821 kb on - strandat 1715.043 kb on + strand, within OKFHMN_09135at 1715.059 kb on - strand, within OKFHMN_09135at 1715.059 kb on - strand, within OKFHMN_09135at 1715.250 kb on + strand, within OKFHMN_09135at 1715.250 kb on + strand, within OKFHMN_09135at 1715.251 kb on - strand, within OKFHMN_09135at 1715.305 kb on - strand, within OKFHMN_09135at 1715.336 kb on - strand, within OKFHMN_09135at 1715.415 kb on - strand, within OKFHMN_09135at 1715.448 kb on - strand, within OKFHMN_09135at 1715.448 kb on - strand, within OKFHMN_09135at 1715.507 kb on - strand, within OKFHMN_09135at 1715.509 kb on - strand, within OKFHMN_09135at 1715.509 kb on - strand, within OKFHMN_09135at 1715.857 kb on - strand, within OKFHMN_09140at 1715.883 kb on + strand, within OKFHMN_09140at 1715.884 kb on - strand, within OKFHMN_09140at 1715.884 kb on - strand, within OKFHMN_09140at 1715.914 kb on - strand, within OKFHMN_09140at 1715.914 kb on - strand, within OKFHMN_09140at 1715.914 kb on - strand, within OKFHMN_09140at 1715.925 kb on + strand, within OKFHMN_09140at 1715.926 kb on - strand, within OKFHMN_09140at 1715.997 kb on - strand, within OKFHMN_09140at 1715.997 kb on - strand, within OKFHMN_09140at 1715.997 kb on - strand, within OKFHMN_09140at 1716.019 kb on + strand, within OKFHMN_09140at 1716.057 kb on + strand, within OKFHMN_09140at 1716.058 kb on - strand, within OKFHMN_09140at 1716.072 kb on + strand, within OKFHMN_09140at 1716.393 kb on + strand, within OKFHMN_09140at 1716.516 kb on + strand, within OKFHMN_09140at 1716.517 kb on - strand, within OKFHMN_09140at 1716.524 kb on + strand, within OKFHMN_09140at 1716.525 kb on - strand, within OKFHMN_09140

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,713,998 - glxA OKFHMN_09130 0.18 -2.4
1,713,998 - glxA OKFHMN_09130 0.18 +0.4
1,714,273 + glxA OKFHMN_09130 0.50 +0.0
1,714,273 + glxA OKFHMN_09130 0.50 +0.7
1,714,499 - glxA OKFHMN_09130 0.77 -2.5
1,714,499 - glxA OKFHMN_09130 0.77 -0.4
1,714,709 - +0.5
1,714,815 - +0.6
1,714,821 - +0.2
1,715,043 + OKFHMN_09135 0.28 +0.1
1,715,059 - OKFHMN_09135 0.30 -0.4
1,715,059 - OKFHMN_09135 0.30 +0.1
1,715,250 + OKFHMN_09135 0.54 +0.3
1,715,250 + OKFHMN_09135 0.54 -0.4
1,715,251 - OKFHMN_09135 0.54 -0.0
1,715,305 - OKFHMN_09135 0.61 +0.1
1,715,336 - OKFHMN_09135 0.65 -0.5
1,715,415 - OKFHMN_09135 0.74 +0.1
1,715,448 - OKFHMN_09135 0.79 -0.1
1,715,448 - OKFHMN_09135 0.79 -1.1
1,715,507 - OKFHMN_09135 0.86 -1.7
1,715,509 - OKFHMN_09135 0.86 -0.4
1,715,509 - OKFHMN_09135 0.86 +0.1
1,715,857 - OKFHMN_09140 0.16 -2.5
1,715,883 + OKFHMN_09140 0.18 -1.0
1,715,884 - OKFHMN_09140 0.18 +0.6
1,715,884 - OKFHMN_09140 0.18 -0.7
1,715,914 - OKFHMN_09140 0.20 -0.4
1,715,914 - OKFHMN_09140 0.20 -0.3
1,715,914 - OKFHMN_09140 0.20 +0.2
1,715,925 + OKFHMN_09140 0.21 +0.1
1,715,926 - OKFHMN_09140 0.21 -0.2
1,715,997 - OKFHMN_09140 0.26 -0.6
1,715,997 - OKFHMN_09140 0.26 +0.2
1,715,997 - OKFHMN_09140 0.26 -0.0
1,716,019 + OKFHMN_09140 0.27 +0.3
1,716,057 + OKFHMN_09140 0.30 +0.7
1,716,058 - OKFHMN_09140 0.30 -0.3
1,716,072 + OKFHMN_09140 0.31 -1.4
1,716,393 + OKFHMN_09140 0.52 -1.4
1,716,516 + OKFHMN_09140 0.61 -0.2
1,716,517 - OKFHMN_09140 0.61 +0.2
1,716,524 + OKFHMN_09140 0.61 +0.4
1,716,525 - OKFHMN_09140 0.61 +0.5

Or see this region's nucleotide sequence