Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt betT and betI are separated by 128 nucleotides betI and betB are separated by 13 nucleotides betB and betA are separated by 13 nucleotides
OKFHMN_09035: betT - choline BCCT transporter BetT, at 1,693,845 to 1,695,878
betT
OKFHMN_09040: betI - transcriptional regulator BetI, at 1,696,007 to 1,696,594
betI
OKFHMN_09045: betB - betaine-aldehyde dehydrogenase, at 1,696,608 to 1,698,080
betB
OKFHMN_09050: betA - choline dehydrogenase, at 1,698,094 to 1,699,782
betA
Position (kb)
1696
1697
1698
1699 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1695.683 kb on + strand at 1695.683 kb on + strand at 1695.684 kb on - strand at 1695.685 kb on + strand at 1695.685 kb on + strand at 1695.685 kb on + strand at 1695.685 kb on + strand at 1695.685 kb on + strand at 1695.685 kb on + strand at 1695.686 kb on - strand at 1695.686 kb on - strand at 1695.686 kb on - strand at 1695.706 kb on + strand at 1695.707 kb on - strand at 1695.709 kb on + strand at 1695.709 kb on + strand at 1695.961 kb on + strand at 1696.072 kb on - strand, within betI at 1696.133 kb on - strand, within betI at 1696.233 kb on + strand, within betI at 1696.354 kb on + strand, within betI at 1696.354 kb on + strand, within betI at 1696.355 kb on - strand, within betI at 1696.534 kb on + strand, within betI at 1696.635 kb on + strand at 1696.635 kb on + strand at 1696.635 kb on + strand at 1696.636 kb on - strand at 1696.637 kb on + strand at 1696.638 kb on - strand at 1696.639 kb on + strand at 1696.639 kb on + strand at 1696.640 kb on - strand at 1696.640 kb on - strand at 1696.650 kb on + strand at 1696.817 kb on + strand, within betB at 1696.953 kb on + strand, within betB at 1697.067 kb on + strand, within betB at 1697.067 kb on + strand, within betB at 1697.209 kb on + strand, within betB at 1697.214 kb on - strand, within betB at 1697.466 kb on - strand, within betB at 1697.466 kb on - strand, within betB at 1697.799 kb on + strand, within betB at 1697.844 kb on + strand, within betB at 1697.919 kb on - strand, within betB at 1698.091 kb on + strand at 1698.092 kb on - strand at 1698.379 kb on + strand, within betA at 1698.379 kb on + strand, within betA at 1698.380 kb on - strand, within betA at 1698.380 kb on - strand, within betA at 1698.445 kb on + strand, within betA at 1698.744 kb on + strand, within betA at 1698.745 kb on - strand, within betA at 1698.861 kb on - strand, within betA at 1699.000 kb on + strand, within betA at 1699.001 kb on - strand, within betA at 1699.009 kb on + strand, within betA at 1699.010 kb on - strand, within betA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,695,683 + +0.5 1,695,683 + +0.4 1,695,684 - +0.1 1,695,685 + +0.1 1,695,685 + +0.3 1,695,685 + -0.3 1,695,685 + -0.1 1,695,685 + +0.2 1,695,685 + -2.4 1,695,686 - +0.7 1,695,686 - -0.9 1,695,686 - -0.4 1,695,706 + -0.2 1,695,707 - +0.1 1,695,709 + +0.4 1,695,709 + +0.6 1,695,961 + +0.1 1,696,072 - betI OKFHMN_09040 0.11 -1.4 1,696,133 - betI OKFHMN_09040 0.21 -1.4 1,696,233 + betI OKFHMN_09040 0.38 -0.1 1,696,354 + betI OKFHMN_09040 0.59 +0.6 1,696,354 + betI OKFHMN_09040 0.59 +1.3 1,696,355 - betI OKFHMN_09040 0.59 +0.5 1,696,534 + betI OKFHMN_09040 0.90 +1.2 1,696,635 + -1.3 1,696,635 + -0.3 1,696,635 + +0.5 1,696,636 - -0.8 1,696,637 + -0.2 1,696,638 - +0.7 1,696,639 + +0.6 1,696,639 + +1.6 1,696,640 - -0.6 1,696,640 - -0.5 1,696,650 + +0.2 1,696,817 + betB OKFHMN_09045 0.14 +0.1 1,696,953 + betB OKFHMN_09045 0.23 -0.1 1,697,067 + betB OKFHMN_09045 0.31 +0.0 1,697,067 + betB OKFHMN_09045 0.31 +0.3 1,697,209 + betB OKFHMN_09045 0.41 +2.0 1,697,214 - betB OKFHMN_09045 0.41 +0.2 1,697,466 - betB OKFHMN_09045 0.58 -0.2 1,697,466 - betB OKFHMN_09045 0.58 -0.3 1,697,799 + betB OKFHMN_09045 0.81 +0.2 1,697,844 + betB OKFHMN_09045 0.84 +0.3 1,697,919 - betB OKFHMN_09045 0.89 +0.0 1,698,091 + -0.4 1,698,092 - +0.3 1,698,379 + betA OKFHMN_09050 0.17 +0.0 1,698,379 + betA OKFHMN_09050 0.17 +0.8 1,698,380 - betA OKFHMN_09050 0.17 +0.5 1,698,380 - betA OKFHMN_09050 0.17 +0.4 1,698,445 + betA OKFHMN_09050 0.21 +0.2 1,698,744 + betA OKFHMN_09050 0.38 -0.4 1,698,745 - betA OKFHMN_09050 0.39 +0.0 1,698,861 - betA OKFHMN_09050 0.45 +0.2 1,699,000 + betA OKFHMN_09050 0.54 +0.9 1,699,001 - betA OKFHMN_09050 0.54 -0.5 1,699,009 + betA OKFHMN_09050 0.54 +0.2 1,699,010 - betA OKFHMN_09050 0.54 -0.2
Or see this region's nucleotide sequence