Strain Fitness in Escherichia coli ECRC100 around OKFHMN_08810

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlacI and lacZ are separated by 122 nucleotideslacZ and lacY are separated by 51 nucleotides OKFHMN_08805: lacI - DNA-binding transcriptional repressor LacI, at 1,648,709 to 1,649,800 lacI OKFHMN_08810: lacZ - beta-galactosidase, at 1,649,923 to 1,652,997 lacZ OKFHMN_08815: lacY - lactose permease, at 1,653,049 to 1,654,302 lacY Position (kb) 1649 1650 1651 1652 1653Strain fitness (log2 ratio) -2 -1 0 1at 1649.013 kb on + strand, within lacIat 1649.014 kb on - strand, within lacIat 1649.039 kb on - strand, within lacIat 1649.090 kb on - strand, within lacIat 1649.271 kb on + strand, within lacIat 1649.284 kb on - strand, within lacIat 1649.323 kb on + strand, within lacIat 1649.324 kb on - strand, within lacIat 1649.324 kb on - strand, within lacIat 1649.327 kb on + strand, within lacIat 1649.416 kb on - strand, within lacIat 1649.562 kb on - strand, within lacIat 1649.562 kb on - strand, within lacIat 1649.564 kb on - strand, within lacIat 1649.564 kb on - strand, within lacIat 1649.755 kb on - strandat 1649.813 kb on + strandat 1649.997 kb on + strandat 1650.208 kb on + strandat 1650.224 kb on - strandat 1650.224 kb on - strandat 1650.850 kb on + strand, within lacZat 1650.851 kb on - strand, within lacZat 1651.058 kb on + strand, within lacZat 1651.148 kb on - strand, within lacZat 1651.167 kb on + strand, within lacZat 1651.324 kb on - strand, within lacZat 1651.419 kb on + strand, within lacZat 1651.419 kb on + strand, within lacZat 1651.419 kb on + strand, within lacZat 1651.419 kb on + strand, within lacZat 1651.420 kb on - strand, within lacZat 1651.432 kb on + strand, within lacZat 1651.555 kb on - strand, within lacZat 1651.688 kb on - strand, within lacZat 1652.025 kb on - strand, within lacZat 1652.185 kb on - strand, within lacZat 1652.434 kb on - strand, within lacZat 1652.505 kb on + strand, within lacZat 1652.506 kb on - strand, within lacZat 1652.540 kb on + strand, within lacZat 1652.541 kb on - strand, within lacZat 1652.701 kb on + strandat 1652.701 kb on + strandat 1652.701 kb on + strandat 1652.702 kb on - strandat 1652.702 kb on - strandat 1652.702 kb on - strandat 1652.702 kb on - strandat 1652.711 kb on - strandat 1653.124 kb on + strandat 1653.165 kb on + strandat 1653.221 kb on + strand, within lacYat 1653.345 kb on - strand, within lacYat 1653.350 kb on - strand, within lacYat 1653.730 kb on + strand, within lacYat 1653.730 kb on + strand, within lacYat 1653.731 kb on - strand, within lacYat 1653.754 kb on + strand, within lacYat 1653.828 kb on - strand, within lacYat 1653.942 kb on + strand, within lacYat 1653.942 kb on + strand, within lacYat 1653.942 kb on + strand, within lacYat 1653.943 kb on - strand, within lacYat 1653.950 kb on + strand, within lacY

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,649,013 + lacI OKFHMN_08805 0.28 -0.2
1,649,014 - lacI OKFHMN_08805 0.28 -0.1
1,649,039 - lacI OKFHMN_08805 0.30 +0.8
1,649,090 - lacI OKFHMN_08805 0.35 -0.1
1,649,271 + lacI OKFHMN_08805 0.51 -1.1
1,649,284 - lacI OKFHMN_08805 0.53 +0.2
1,649,323 + lacI OKFHMN_08805 0.56 -0.1
1,649,324 - lacI OKFHMN_08805 0.56 +0.0
1,649,324 - lacI OKFHMN_08805 0.56 +0.2
1,649,327 + lacI OKFHMN_08805 0.57 -0.1
1,649,416 - lacI OKFHMN_08805 0.65 -0.8
1,649,562 - lacI OKFHMN_08805 0.78 +0.4
1,649,562 - lacI OKFHMN_08805 0.78 -0.3
1,649,564 - lacI OKFHMN_08805 0.78 -0.1
1,649,564 - lacI OKFHMN_08805 0.78 +1.2
1,649,755 - -0.7
1,649,813 + -0.0
1,649,997 + +0.1
1,650,208 + -1.0
1,650,224 - +0.3
1,650,224 - +0.4
1,650,850 + lacZ OKFHMN_08810 0.30 -1.2
1,650,851 - lacZ OKFHMN_08810 0.30 +0.3
1,651,058 + lacZ OKFHMN_08810 0.37 -0.3
1,651,148 - lacZ OKFHMN_08810 0.40 +0.5
1,651,167 + lacZ OKFHMN_08810 0.40 +0.3
1,651,324 - lacZ OKFHMN_08810 0.46 -1.0
1,651,419 + lacZ OKFHMN_08810 0.49 +0.7
1,651,419 + lacZ OKFHMN_08810 0.49 +0.3
1,651,419 + lacZ OKFHMN_08810 0.49 +0.5
1,651,419 + lacZ OKFHMN_08810 0.49 -0.0
1,651,420 - lacZ OKFHMN_08810 0.49 +0.2
1,651,432 + lacZ OKFHMN_08810 0.49 +0.6
1,651,555 - lacZ OKFHMN_08810 0.53 +0.4
1,651,688 - lacZ OKFHMN_08810 0.57 -0.7
1,652,025 - lacZ OKFHMN_08810 0.68 +0.4
1,652,185 - lacZ OKFHMN_08810 0.74 +1.4
1,652,434 - lacZ OKFHMN_08810 0.82 -0.5
1,652,505 + lacZ OKFHMN_08810 0.84 -1.8
1,652,506 - lacZ OKFHMN_08810 0.84 -0.1
1,652,540 + lacZ OKFHMN_08810 0.85 +0.1
1,652,541 - lacZ OKFHMN_08810 0.85 +0.6
1,652,701 + -1.1
1,652,701 + +0.8
1,652,701 + -0.2
1,652,702 - +1.2
1,652,702 - -0.1
1,652,702 - -1.9
1,652,702 - -1.0
1,652,711 - -2.2
1,653,124 + -0.4
1,653,165 + -0.2
1,653,221 + lacY OKFHMN_08815 0.14 -1.1
1,653,345 - lacY OKFHMN_08815 0.24 +1.1
1,653,350 - lacY OKFHMN_08815 0.24 +0.8
1,653,730 + lacY OKFHMN_08815 0.54 +0.4
1,653,730 + lacY OKFHMN_08815 0.54 -0.2
1,653,731 - lacY OKFHMN_08815 0.54 +0.1
1,653,754 + lacY OKFHMN_08815 0.56 +0.7
1,653,828 - lacY OKFHMN_08815 0.62 +0.9
1,653,942 + lacY OKFHMN_08815 0.71 +0.1
1,653,942 + lacY OKFHMN_08815 0.71 -0.0
1,653,942 + lacY OKFHMN_08815 0.71 +0.4
1,653,943 - lacY OKFHMN_08815 0.71 -0.2
1,653,950 + lacY OKFHMN_08815 0.72 +0.2

Or see this region's nucleotide sequence