Strain Fitness in Escherichia coli ECRC100 around OKFHMN_08585

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_08580 and ppnP are separated by 143 nucleotidesppnP and aroM are separated by 71 nucleotides OKFHMN_08580: OKFHMN_08580 - Protein involved in detoxification of methylglyoxal, at 1,602,341 to 1,604,620 _08580 OKFHMN_08585: ppnP - pyrimidine/purine nucleoside phosphorylase, at 1,604,764 to 1,605,048 ppnP OKFHMN_08590: aroM - Protein AroM, at 1,605,120 to 1,605,797 aroM Position (kb) 1604 1605 1606Strain fitness (log2 ratio) -2 -1 0 1at 1603.799 kb on - strand, within OKFHMN_08580at 1603.975 kb on - strand, within OKFHMN_08580at 1604.289 kb on - strand, within OKFHMN_08580at 1604.443 kb on + strandat 1604.656 kb on + strandat 1604.856 kb on - strand, within ppnPat 1604.945 kb on + strand, within ppnPat 1605.030 kb on - strandat 1605.048 kb on + strandat 1605.074 kb on + strandat 1605.074 kb on + strandat 1605.078 kb on + strandat 1605.088 kb on + strandat 1605.198 kb on + strand, within aroMat 1605.423 kb on - strand, within aroMat 1605.491 kb on + strand, within aroMat 1605.492 kb on - strand, within aroMat 1605.492 kb on - strand, within aroMat 1605.510 kb on + strand, within aroMat 1605.515 kb on + strand, within aroMat 1605.515 kb on + strand, within aroMat 1605.527 kb on - strand, within aroMat 1605.696 kb on - strand, within aroMat 1605.707 kb on + strand, within aroMat 1605.710 kb on + strand, within aroMat 1605.725 kb on - strand, within aroMat 1605.756 kb on - strandat 1605.756 kb on - strandat 1605.759 kb on + strandat 1605.867 kb on - strandat 1605.914 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
1,603,799 - OKFHMN_08580 0.64 -0.0
1,603,975 - OKFHMN_08580 0.72 -0.6
1,604,289 - OKFHMN_08580 0.85 +0.7
1,604,443 + -0.4
1,604,656 + +0.1
1,604,856 - ppnP OKFHMN_08585 0.32 -2.7
1,604,945 + ppnP OKFHMN_08585 0.64 -0.3
1,605,030 - +1.0
1,605,048 + +0.3
1,605,074 + +1.2
1,605,074 + -0.3
1,605,078 + +0.6
1,605,088 + +1.4
1,605,198 + aroM OKFHMN_08590 0.12 +0.8
1,605,423 - aroM OKFHMN_08590 0.45 -0.4
1,605,491 + aroM OKFHMN_08590 0.55 -0.6
1,605,492 - aroM OKFHMN_08590 0.55 +0.6
1,605,492 - aroM OKFHMN_08590 0.55 -1.0
1,605,510 + aroM OKFHMN_08590 0.58 -1.5
1,605,515 + aroM OKFHMN_08590 0.58 -0.1
1,605,515 + aroM OKFHMN_08590 0.58 +0.6
1,605,527 - aroM OKFHMN_08590 0.60 -0.6
1,605,696 - aroM OKFHMN_08590 0.85 +0.6
1,605,707 + aroM OKFHMN_08590 0.87 -2.4
1,605,710 + aroM OKFHMN_08590 0.87 -1.5
1,605,725 - aroM OKFHMN_08590 0.89 +0.4
1,605,756 - -0.8
1,605,756 - -0.3
1,605,759 + -1.0
1,605,867 - -0.3
1,605,914 + -1.1

Or see this region's nucleotide sequence