Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07960

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntylbG and OKFHMN_07955 are separated by 743 nucleotidesOKFHMN_07955 and OKFHMN_07960 overlap by 20 nucleotidesOKFHMN_07960 and ybbP are separated by 429 nucleotides OKFHMN_07950: ylbG - Uncharacterized protein YlbG, at 1,450,703 to 1,451,074 ylbG OKFHMN_07955: OKFHMN_07955 - Protein, at 1,451,818 to 1,452,078 _07955 OKFHMN_07960: OKFHMN_07960 - RHS element protein, at 1,452,059 to 1,456,255 _07960 OKFHMN_07965: ybbP - Uncharacterized ABC transporter permease YbbP, at 1,456,685 to 1,459,099 ybbP Position (kb) 1452 1453 1454 1455 1456 1457Strain fitness (log2 ratio) -1 0 1at 1451.578 kb on - strandat 1451.710 kb on + strandat 1452.355 kb on + strandat 1452.409 kb on - strandat 1452.534 kb on + strand, within OKFHMN_07960at 1452.535 kb on - strand, within OKFHMN_07960at 1452.579 kb on + strand, within OKFHMN_07960at 1452.601 kb on - strand, within OKFHMN_07960at 1452.643 kb on - strand, within OKFHMN_07960at 1452.721 kb on - strand, within OKFHMN_07960at 1452.959 kb on + strand, within OKFHMN_07960at 1452.960 kb on - strand, within OKFHMN_07960at 1453.087 kb on - strand, within OKFHMN_07960at 1453.150 kb on - strand, within OKFHMN_07960at 1454.511 kb on + strand, within OKFHMN_07960at 1454.593 kb on - strand, within OKFHMN_07960at 1454.694 kb on + strand, within OKFHMN_07960at 1454.694 kb on + strand, within OKFHMN_07960at 1454.718 kb on - strand, within OKFHMN_07960at 1455.223 kb on - strand, within OKFHMN_07960at 1455.288 kb on + strand, within OKFHMN_07960at 1456.271 kb on - strandat 1456.673 kb on + strandat 1456.677 kb on + strandat 1456.925 kb on - strandat 1457.023 kb on + strand, within ybbPat 1457.024 kb on - strand, within ybbPat 1457.070 kb on - strand, within ybbPat 1457.126 kb on - strand, within ybbPat 1457.217 kb on - strand, within ybbP

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,451,578 - +0.4
1,451,710 + +0.3
1,452,355 + +0.1
1,452,409 - -0.3
1,452,534 + OKFHMN_07960 0.11 -0.6
1,452,535 - OKFHMN_07960 0.11 -0.3
1,452,579 + OKFHMN_07960 0.12 +0.3
1,452,601 - OKFHMN_07960 0.13 -0.1
1,452,643 - OKFHMN_07960 0.14 -0.0
1,452,721 - OKFHMN_07960 0.16 -1.4
1,452,959 + OKFHMN_07960 0.21 -0.9
1,452,960 - OKFHMN_07960 0.21 +0.7
1,453,087 - OKFHMN_07960 0.24 +0.7
1,453,150 - OKFHMN_07960 0.26 -0.4
1,454,511 + OKFHMN_07960 0.58 +0.3
1,454,593 - OKFHMN_07960 0.60 -0.2
1,454,694 + OKFHMN_07960 0.63 -0.0
1,454,694 + OKFHMN_07960 0.63 +0.4
1,454,718 - OKFHMN_07960 0.63 +1.4
1,455,223 - OKFHMN_07960 0.75 +0.8
1,455,288 + OKFHMN_07960 0.77 -1.7
1,456,271 - -1.0
1,456,673 + -0.8
1,456,677 + +0.7
1,456,925 - -0.2
1,457,023 + ybbP OKFHMN_07965 0.14 +0.0
1,457,024 - ybbP OKFHMN_07965 0.14 +0.1
1,457,070 - ybbP OKFHMN_07965 0.16 -0.1
1,457,126 - ybbP OKFHMN_07965 0.18 +0.3
1,457,217 - ybbP OKFHMN_07965 0.22 -0.2

Or see this region's nucleotide sequence