Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07660

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybdK and ybdJ are separated by 113 nucleotidesybdJ and ybdF are separated by 64 nucleotidesybdF and nfsB are separated by 93 nucleotides OKFHMN_07655: ybdK - YbdK family carboxylate-amine ligase, at 1,383,403 to 1,384,521 ybdK OKFHMN_07660: ybdJ - Uncharacterized protein YbdJ, at 1,384,635 to 1,384,835 ybdJ OKFHMN_07665: ybdF - MmcQ/YjbR family DNA-binding protein, at 1,384,900 to 1,385,268 ybdF OKFHMN_07670: nfsB - oxygen-insensitive NAD(P)H nitroreductase, at 1,385,362 to 1,386,015 nfsB Position (kb) 1384 1385Strain fitness (log2 ratio) -3 -2 -1 0 1at 1383.776 kb on - strand, within ybdKat 1383.911 kb on - strand, within ybdKat 1383.912 kb on + strand, within ybdKat 1383.912 kb on + strand, within ybdKat 1383.912 kb on + strand, within ybdKat 1383.912 kb on + strand, within ybdKat 1383.913 kb on - strand, within ybdKat 1383.913 kb on - strand, within ybdKat 1383.913 kb on - strand, within ybdKat 1383.913 kb on - strand, within ybdKat 1383.999 kb on + strand, within ybdKat 1384.143 kb on + strand, within ybdKat 1384.231 kb on + strand, within ybdKat 1384.371 kb on + strand, within ybdKat 1384.372 kb on - strand, within ybdKat 1384.572 kb on - strandat 1384.586 kb on + strandat 1384.601 kb on - strandat 1384.683 kb on - strand, within ybdJat 1384.864 kb on + strandat 1385.101 kb on + strand, within ybdFat 1385.266 kb on + strandat 1385.280 kb on - strandat 1385.300 kb on - strandat 1385.361 kb on + strandat 1385.401 kb on - strandat 1385.467 kb on + strand, within nfsBat 1385.505 kb on + strand, within nfsBat 1385.564 kb on - strand, within nfsBat 1385.564 kb on - strand, within nfsBat 1385.564 kb on - strand, within nfsBat 1385.580 kb on + strand, within nfsBat 1385.581 kb on - strand, within nfsBat 1385.791 kb on + strand, within nfsB

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,383,776 - ybdK OKFHMN_07655 0.33 -2.2
1,383,911 - ybdK OKFHMN_07655 0.45 +0.7
1,383,912 + ybdK OKFHMN_07655 0.45 -0.7
1,383,912 + ybdK OKFHMN_07655 0.45 +0.4
1,383,912 + ybdK OKFHMN_07655 0.45 +0.2
1,383,912 + ybdK OKFHMN_07655 0.45 -0.3
1,383,913 - ybdK OKFHMN_07655 0.46 +0.2
1,383,913 - ybdK OKFHMN_07655 0.46 +0.1
1,383,913 - ybdK OKFHMN_07655 0.46 +0.9
1,383,913 - ybdK OKFHMN_07655 0.46 +0.1
1,383,999 + ybdK OKFHMN_07655 0.53 -0.3
1,384,143 + ybdK OKFHMN_07655 0.66 +1.0
1,384,231 + ybdK OKFHMN_07655 0.74 +0.6
1,384,371 + ybdK OKFHMN_07655 0.87 +0.9
1,384,372 - ybdK OKFHMN_07655 0.87 -0.1
1,384,572 - -0.5
1,384,586 + +0.5
1,384,601 - -2.3
1,384,683 - ybdJ OKFHMN_07660 0.24 -0.8
1,384,864 + -0.2
1,385,101 + ybdF OKFHMN_07665 0.54 -3.3
1,385,266 + -0.9
1,385,280 - -0.6
1,385,300 - -0.8
1,385,361 + -1.7
1,385,401 - +0.3
1,385,467 + nfsB OKFHMN_07670 0.16 +0.4
1,385,505 + nfsB OKFHMN_07670 0.22 +0.4
1,385,564 - nfsB OKFHMN_07670 0.31 -1.6
1,385,564 - nfsB OKFHMN_07670 0.31 +0.7
1,385,564 - nfsB OKFHMN_07670 0.31 +0.5
1,385,580 + nfsB OKFHMN_07670 0.33 -1.4
1,385,581 - nfsB OKFHMN_07670 0.33 -1.6
1,385,791 + nfsB OKFHMN_07670 0.66 +0.3

Or see this region's nucleotide sequence