Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt citT and rna are separated by 113 nucleotides rna and rnk are separated by 229 nucleotides rnk and yldA are separated by 137 nucleotides yldA and ybdR are separated by 3 nucleotides
OKFHMN_07475: citT - citrate/succinate antiporter CitT, at 1,345,368 to 1,346,831
citT
OKFHMN_07480: rna - ribonuclease I, at 1,346,945 to 1,347,751
rna
OKFHMN_07485: rnk - nucleoside diphosphate kinase regulator, at 1,347,981 to 1,348,391
rnk
OKFHMN_07490: yldA - Protein YldA, at 1,348,529 to 1,348,618
yldA
OKFHMN_07495: ybdR - Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR, at 1,348,622 to 1,349,860
ybdR
Position (kb) 1346
1347
1348 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1345.968 kb on - strand, within citT at 1345.971 kb on - strand, within citT at 1346.134 kb on - strand, within citT at 1346.248 kb on + strand, within citT at 1346.273 kb on - strand, within citT at 1346.297 kb on + strand, within citT at 1346.372 kb on + strand, within citT at 1346.372 kb on + strand, within citT at 1346.373 kb on - strand, within citT at 1346.607 kb on - strand, within citT at 1346.613 kb on - strand, within citT at 1346.623 kb on + strand, within citT at 1346.711 kb on + strand at 1346.778 kb on + strand at 1346.786 kb on + strand at 1346.832 kb on + strand at 1346.832 kb on + strand at 1346.910 kb on + strand at 1346.911 kb on - strand at 1346.913 kb on + strand at 1346.922 kb on + strand at 1346.923 kb on - strand at 1346.926 kb on + strand at 1347.015 kb on + strand at 1347.053 kb on + strand, within rna at 1347.054 kb on - strand, within rna at 1347.112 kb on + strand, within rna at 1347.174 kb on + strand, within rna at 1347.175 kb on - strand, within rna at 1347.175 kb on - strand, within rna at 1347.348 kb on + strand, within rna at 1347.348 kb on + strand, within rna at 1347.401 kb on + strand, within rna at 1347.443 kb on + strand, within rna at 1347.460 kb on - strand, within rna at 1347.597 kb on + strand, within rna at 1347.775 kb on - strand at 1347.811 kb on + strand at 1347.815 kb on + strand at 1347.815 kb on + strand at 1347.816 kb on - strand at 1347.936 kb on + strand at 1347.936 kb on + strand at 1347.995 kb on + strand at 1347.996 kb on - strand at 1348.625 kb on + strand at 1348.625 kb on + strand at 1348.626 kb on - strand at 1348.626 kb on - strand at 1348.715 kb on - strand at 1348.750 kb on - strand, within ybdR
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,345,968 - citT OKFHMN_07475 0.41 -1.3 1,345,971 - citT OKFHMN_07475 0.41 -1.1 1,346,134 - citT OKFHMN_07475 0.52 +0.1 1,346,248 + citT OKFHMN_07475 0.60 -2.6 1,346,273 - citT OKFHMN_07475 0.62 -0.6 1,346,297 + citT OKFHMN_07475 0.63 -1.7 1,346,372 + citT OKFHMN_07475 0.69 -1.6 1,346,372 + citT OKFHMN_07475 0.69 +0.0 1,346,373 - citT OKFHMN_07475 0.69 -0.2 1,346,607 - citT OKFHMN_07475 0.85 +1.1 1,346,613 - citT OKFHMN_07475 0.85 +0.9 1,346,623 + citT OKFHMN_07475 0.86 +0.4 1,346,711 + +0.9 1,346,778 + +0.7 1,346,786 + -0.1 1,346,832 + -0.6 1,346,832 + -0.1 1,346,910 + -0.3 1,346,911 - +0.5 1,346,913 + -1.4 1,346,922 + -0.6 1,346,923 - +0.4 1,346,926 + +1.2 1,347,015 + +1.3 1,347,053 + rna OKFHMN_07480 0.13 +0.6 1,347,054 - rna OKFHMN_07480 0.14 -0.0 1,347,112 + rna OKFHMN_07480 0.21 -3.0 1,347,174 + rna OKFHMN_07480 0.28 +0.4 1,347,175 - rna OKFHMN_07480 0.29 +0.8 1,347,175 - rna OKFHMN_07480 0.29 +1.5 1,347,348 + rna OKFHMN_07480 0.50 +0.1 1,347,348 + rna OKFHMN_07480 0.50 +0.7 1,347,401 + rna OKFHMN_07480 0.57 -4.0 1,347,443 + rna OKFHMN_07480 0.62 -0.7 1,347,460 - rna OKFHMN_07480 0.64 +0.2 1,347,597 + rna OKFHMN_07480 0.81 -0.2 1,347,775 - +0.4 1,347,811 + -0.3 1,347,815 + +0.3 1,347,815 + +0.4 1,347,816 - +0.6 1,347,936 + -0.0 1,347,936 + +0.1 1,347,995 + +0.9 1,347,996 - +0.9 1,348,625 + +1.0 1,348,625 + +0.3 1,348,626 - +0.2 1,348,626 - -1.6 1,348,715 - +0.9 1,348,750 - ybdR OKFHMN_07495 0.10 -0.2
Or see this region's nucleotide sequence