Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05940

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrlmC and ybjO are separated by 40 nucleotidesybjO and potI are separated by 59 nucleotidespotI and potH overlap by 4 nucleotides OKFHMN_05935: rlmC - 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC, at 1,048,342 to 1,049,469 rlmC OKFHMN_05940: ybjO - Inner membrane protein YbjO, at 1,049,510 to 1,049,998 ybjO OKFHMN_05945: potI - putrescine ABC transporter permease PotI, at 1,050,058 to 1,050,903 potI OKFHMN_05950: potH - putrescine ABC transporter permease PotH, at 1,050,900 to 1,051,853 potH Position (kb) 1049 1050Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1048.724 kb on - strand, within rlmCat 1048.761 kb on + strand, within rlmCat 1048.761 kb on + strand, within rlmCat 1048.761 kb on + strand, within rlmCat 1048.762 kb on - strand, within rlmCat 1048.762 kb on - strand, within rlmCat 1048.762 kb on - strand, within rlmCat 1048.762 kb on - strand, within rlmCat 1048.910 kb on + strand, within rlmCat 1048.941 kb on + strand, within rlmCat 1048.945 kb on + strand, within rlmCat 1049.132 kb on + strand, within rlmCat 1049.275 kb on - strand, within rlmCat 1049.299 kb on - strand, within rlmCat 1049.373 kb on + strandat 1049.470 kb on - strandat 1049.504 kb on + strandat 1049.504 kb on + strandat 1049.511 kb on + strandat 1049.899 kb on + strand, within ybjOat 1049.899 kb on + strand, within ybjOat 1050.018 kb on - strandat 1050.027 kb on + strandat 1050.028 kb on - strandat 1050.028 kb on - strandat 1050.028 kb on - strandat 1050.028 kb on - strandat 1050.032 kb on - strandat 1050.120 kb on - strandat 1050.170 kb on - strand, within potIat 1050.289 kb on - strand, within potIat 1050.394 kb on + strand, within potIat 1050.429 kb on + strand, within potIat 1050.443 kb on + strand, within potIat 1050.480 kb on + strand, within potIat 1050.651 kb on + strand, within potIat 1050.651 kb on + strand, within potI

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,048,724 - rlmC OKFHMN_05935 0.34 -0.8
1,048,761 + rlmC OKFHMN_05935 0.37 -1.1
1,048,761 + rlmC OKFHMN_05935 0.37 +0.1
1,048,761 + rlmC OKFHMN_05935 0.37 -0.4
1,048,762 - rlmC OKFHMN_05935 0.37 +1.6
1,048,762 - rlmC OKFHMN_05935 0.37 +0.6
1,048,762 - rlmC OKFHMN_05935 0.37 -0.6
1,048,762 - rlmC OKFHMN_05935 0.37 -0.2
1,048,910 + rlmC OKFHMN_05935 0.50 +1.0
1,048,941 + rlmC OKFHMN_05935 0.53 -2.3
1,048,945 + rlmC OKFHMN_05935 0.53 -0.3
1,049,132 + rlmC OKFHMN_05935 0.70 -0.2
1,049,275 - rlmC OKFHMN_05935 0.83 +1.1
1,049,299 - rlmC OKFHMN_05935 0.85 +0.9
1,049,373 + +1.0
1,049,470 - -0.7
1,049,504 + +0.3
1,049,504 + -0.5
1,049,511 + -4.0
1,049,899 + ybjO OKFHMN_05940 0.80 +1.1
1,049,899 + ybjO OKFHMN_05940 0.80 +1.1
1,050,018 - +1.6
1,050,027 + -0.7
1,050,028 - -0.5
1,050,028 - +0.4
1,050,028 - -2.3
1,050,028 - +0.5
1,050,032 - -1.0
1,050,120 - -0.3
1,050,170 - potI OKFHMN_05945 0.13 -0.1
1,050,289 - potI OKFHMN_05945 0.27 +0.2
1,050,394 + potI OKFHMN_05945 0.40 -0.1
1,050,429 + potI OKFHMN_05945 0.44 +0.4
1,050,443 + potI OKFHMN_05945 0.46 -1.1
1,050,480 + potI OKFHMN_05945 0.50 +0.7
1,050,651 + potI OKFHMN_05945 0.70 -0.0
1,050,651 + potI OKFHMN_05945 0.70 +0.9

Or see this region's nucleotide sequence