Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04955

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_04940 and tnpB are separated by 49 nucleotidestnpB and tnpB overlap by 4 nucleotidestnpB and nu1 are separated by 75 nucleotidesnu1 and OKFHMN_04960 are separated by 750 nucleotides OKFHMN_04940: OKFHMN_04940 - IS66-like element ISEc8 family transposase, at 826,380 to 827,918 _04940 OKFHMN_04945: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 827,968 to 828,315 tnpB OKFHMN_04950: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 828,312 to 828,692 tnpB OKFHMN_04955: nu1 - Prophage Qin DNA packaging protein NU1-like protein, at 828,768 to 829,043 nu1 OKFHMN_04960: OKFHMN_04960 - holin, at 829,794 to 830,000 _04960 Position (kb) 828 829 830Strain fitness (log2 ratio) -1 0 1at 829.565 kb on + strandat 829.565 kb on + strandat 829.999 kb on - strandat 830.016 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
829,565 + -0.5
829,565 + +0.7
829,999 - -1.2
830,016 + +0.1

Or see this region's nucleotide sequence