Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04710

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttorC and torR are separated by 129 nucleotidestorR and torT overlap by 28 nucleotides OKFHMN_04705: torC - pentaheme c-type cytochrome TorC, at 778,417 to 779,589 torC OKFHMN_04710: torR - two-component system response regulator TorR, at 779,719 to 780,411 torR OKFHMN_04715: torT - TMAO reductase system periplasmic protein TorT, at 780,384 to 781,412 torT Position (kb) 779 780 781Strain fitness (log2 ratio) -2 -1 0 1at 778.795 kb on - strand, within torCat 778.959 kb on + strand, within torCat 779.061 kb on + strand, within torCat 779.062 kb on - strand, within torCat 779.159 kb on + strand, within torCat 779.159 kb on + strand, within torCat 779.159 kb on + strand, within torCat 779.160 kb on - strand, within torCat 779.406 kb on + strand, within torCat 779.417 kb on + strand, within torCat 779.418 kb on - strand, within torCat 779.491 kb on + strandat 779.673 kb on - strandat 779.909 kb on + strand, within torRat 779.982 kb on + strand, within torRat 780.103 kb on + strand, within torRat 780.103 kb on + strand, within torRat 780.359 kb on + strandat 780.385 kb on + strandat 780.534 kb on + strand, within torTat 780.810 kb on - strand, within torTat 781.218 kb on - strand, within torTat 781.222 kb on + strand, within torTat 781.222 kb on + strand, within torT

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
778,795 - torC OKFHMN_04705 0.32 -0.6
778,959 + torC OKFHMN_04705 0.46 -0.8
779,061 + torC OKFHMN_04705 0.55 +0.2
779,062 - torC OKFHMN_04705 0.55 -2.7
779,159 + torC OKFHMN_04705 0.63 +0.1
779,159 + torC OKFHMN_04705 0.63 +1.2
779,159 + torC OKFHMN_04705 0.63 -0.3
779,160 - torC OKFHMN_04705 0.63 +0.1
779,406 + torC OKFHMN_04705 0.84 -2.0
779,417 + torC OKFHMN_04705 0.85 -0.6
779,418 - torC OKFHMN_04705 0.85 +0.0
779,491 + -0.1
779,673 - -0.3
779,909 + torR OKFHMN_04710 0.27 +0.3
779,982 + torR OKFHMN_04710 0.38 -1.1
780,103 + torR OKFHMN_04710 0.55 -0.0
780,103 + torR OKFHMN_04710 0.55 -1.3
780,359 + -1.1
780,385 + +0.3
780,534 + torT OKFHMN_04715 0.15 -1.4
780,810 - torT OKFHMN_04715 0.41 +0.9
781,218 - torT OKFHMN_04715 0.81 -1.2
781,222 + torT OKFHMN_04715 0.81 +0.6
781,222 + torT OKFHMN_04715 0.81 +1.5

Or see this region's nucleotide sequence