Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03890

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntghrA and Ser_trna are separated by 233 nucleotidesSer_trna and OKFHMN_03890 are separated by 149 nucleotidesOKFHMN_03890 and OKFHMN_03895 are separated by 293 nucleotidesOKFHMN_03895 and OKFHMN_03900 overlap by 4 nucleotides OKFHMN_03880: ghrA - glyoxylate/hydroxypyruvate reductase GhrA, at 618,143 to 619,081 ghrA OKFHMN_03885: Ser_trna - tRNA-Ser(gga), at 619,315 to 619,402 _trna OKFHMN_03890: OKFHMN_03890 - restriction endonuclease subunit M, at 619,552 to 620,394 _03890 OKFHMN_03895: OKFHMN_03895 - DUF5983 domain-containing protein, at 620,688 to 621,179 _03895 OKFHMN_03900: OKFHMN_03900 - toxin, at 621,176 to 621,550 _03900 Position (kb) 619 620 621Strain fitness (log2 ratio) -1 0 1at 618.634 kb on + strand, within ghrAat 618.800 kb on - strand, within ghrAat 619.136 kb on - strandat 619.136 kb on - strandat 619.495 kb on - strandat 619.651 kb on - strand, within OKFHMN_03890at 619.656 kb on - strand, within OKFHMN_03890at 619.825 kb on - strand, within OKFHMN_03890at 620.052 kb on + strand, within OKFHMN_03890

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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618,634 + ghrA OKFHMN_03880 0.52 -0.3
618,800 - ghrA OKFHMN_03880 0.70 -0.3
619,136 - +0.9
619,136 - -0.0
619,495 - -1.2
619,651 - OKFHMN_03890 0.12 +0.7
619,656 - OKFHMN_03890 0.12 -0.1
619,825 - OKFHMN_03890 0.32 -1.6
620,052 + OKFHMN_03890 0.59 -1.4

Or see this region's nucleotide sequence