Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycdY and ycdX are separated by 23 nucleotides ycdX and ghrA are separated by 54 nucleotides ghrA and Ser_trna are separated by 233 nucleotides Ser_trna and OKFHMN_03890 are separated by 149 nucleotides
OKFHMN_03870: ycdY - molecular chaperone YcdY, at 616,773 to 617,327
ycdY
OKFHMN_03875: ycdX - zinc-binding phosphatase, at 617,351 to 618,088
ycdX
OKFHMN_03880: ghrA - glyoxylate/hydroxypyruvate reductase GhrA, at 618,143 to 619,081
ghrA
OKFHMN_03885: Ser_trna - tRNA-Ser(gga), at 619,315 to 619,402
_trna
OKFHMN_03890: OKFHMN_03890 - restriction endonuclease subunit M, at 619,552 to 620,394
_03890
Position (kb) 618
619
620 Strain fitness (log2 ratio) -2
-1
0
1
2 at 617.285 kb on - strand at 617.329 kb on - strand at 617.332 kb on - strand at 617.334 kb on - strand at 617.471 kb on - strand, within ycdX at 617.523 kb on - strand, within ycdX at 617.549 kb on + strand, within ycdX at 617.591 kb on - strand, within ycdX at 617.591 kb on - strand, within ycdX at 617.706 kb on - strand, within ycdX at 617.749 kb on + strand, within ycdX at 617.750 kb on - strand, within ycdX at 618.022 kb on - strand at 618.062 kb on - strand at 618.068 kb on - strand at 618.088 kb on + strand at 618.089 kb on - strand at 618.089 kb on - strand at 618.122 kb on - strand at 618.206 kb on - strand at 618.634 kb on + strand, within ghrA at 618.800 kb on - strand, within ghrA at 619.136 kb on - strand at 619.136 kb on - strand at 619.495 kb on - strand at 619.651 kb on - strand, within OKFHMN_03890 at 619.656 kb on - strand, within OKFHMN_03890 at 619.825 kb on - strand, within OKFHMN_03890 at 620.052 kb on + strand, within OKFHMN_03890
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 617,285 - -1.4 617,329 - -1.3 617,332 - -2.3 617,334 - -0.2 617,471 - ycdX OKFHMN_03875 0.16 -0.4 617,523 - ycdX OKFHMN_03875 0.23 +0.5 617,549 + ycdX OKFHMN_03875 0.27 -0.3 617,591 - ycdX OKFHMN_03875 0.33 +0.3 617,591 - ycdX OKFHMN_03875 0.33 -0.4 617,706 - ycdX OKFHMN_03875 0.48 -0.3 617,749 + ycdX OKFHMN_03875 0.54 +1.7 617,750 - ycdX OKFHMN_03875 0.54 +0.8 618,022 - -0.2 618,062 - -0.6 618,068 - +1.0 618,088 + +0.1 618,089 - +2.1 618,089 - +0.1 618,122 - -2.3 618,206 - -0.4 618,634 + ghrA OKFHMN_03880 0.52 -0.3 618,800 - ghrA OKFHMN_03880 0.70 -0.3 619,136 - +0.9 619,136 - -0.0 619,495 - -1.2 619,651 - OKFHMN_03890 0.12 +0.7 619,656 - OKFHMN_03890 0.12 -0.1 619,825 - OKFHMN_03890 0.32 -1.6 620,052 + OKFHMN_03890 0.59 -1.4
Or see this region's nucleotide sequence