Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03805

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmdoG and mdoC are separated by 425 nucleotidesmdoC and clsC are separated by 7 nucleotides OKFHMN_03800: mdoG - glucans biosynthesis protein MdoG, at 606,096 to 607,598 mdoG OKFHMN_03805: mdoC - glucans biosynthesis protein MdoC, at 608,024 to 609,181 mdoC OKFHMN_03810: clsC - cardiolipin synthase ClsC, at 609,189 to 610,670 clsC Position (kb) 608 609 610Strain fitness (log2 ratio) -2 -1 0 1 2at 607.032 kb on - strand, within mdoGat 607.203 kb on - strand, within mdoGat 607.456 kb on + strandat 607.583 kb on + strandat 607.586 kb on - strandat 607.600 kb on - strandat 607.640 kb on + strandat 607.641 kb on - strandat 607.653 kb on + strandat 607.866 kb on + strandat 607.905 kb on + strandat 607.906 kb on - strandat 608.023 kb on + strandat 608.051 kb on + strandat 608.105 kb on - strandat 608.965 kb on + strand, within mdoCat 609.008 kb on + strand, within mdoCat 609.009 kb on - strand, within mdoCat 609.190 kb on + strandat 609.196 kb on - strandat 609.233 kb on + strandat 609.353 kb on - strand, within clsCat 609.374 kb on + strand, within clsCat 609.691 kb on - strand, within clsCat 609.691 kb on - strand, within clsCat 610.120 kb on - strand, within clsC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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607,032 - mdoG OKFHMN_03800 0.62 +0.3
607,203 - mdoG OKFHMN_03800 0.74 +0.6
607,456 + -0.3
607,583 + -0.1
607,586 - -1.8
607,600 - +2.7
607,640 + +0.8
607,641 - +0.3
607,653 + -0.0
607,866 + -2.2
607,905 + +0.1
607,906 - +1.1
608,023 + +0.3
608,051 + -0.8
608,105 - -2.2
608,965 + mdoC OKFHMN_03805 0.81 -0.0
609,008 + mdoC OKFHMN_03805 0.85 +0.3
609,009 - mdoC OKFHMN_03805 0.85 +0.7
609,190 + -0.1
609,196 - +0.2
609,233 + +0.7
609,353 - clsC OKFHMN_03810 0.11 +0.6
609,374 + clsC OKFHMN_03810 0.12 +0.5
609,691 - clsC OKFHMN_03810 0.34 +1.5
609,691 - clsC OKFHMN_03810 0.34 -1.6
610,120 - clsC OKFHMN_03810 0.63 -1.3

Or see this region's nucleotide sequence