Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03740

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpyrC and dinI are separated by 73 nucleotidesdinI and bssS are separated by 289 nucleotidesbssS and solA are separated by 114 nucleotides OKFHMN_03730: pyrC - dihydroorotase, at 594,356 to 595,402 pyrC OKFHMN_03735: dinI - DNA damage-inducible protein I, at 595,476 to 595,721 dinI OKFHMN_03740: bssS - biofilm formation regulator BssS, at 596,011 to 596,265 bssS OKFHMN_03745: solA - N-methyl-L-tryptophan oxidase, at 596,380 to 597,498 solA Position (kb) 596 597Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 595.017 kb on - strand, within pyrCat 595.190 kb on + strand, within pyrCat 595.426 kb on + strandat 595.475 kb on + strandat 595.723 kb on - strandat 595.823 kb on + strandat 595.824 kb on - strandat 595.934 kb on + strandat 596.076 kb on + strand, within bssSat 596.325 kb on + strandat 596.326 kb on - strandat 596.539 kb on + strand, within solAat 596.540 kb on - strand, within solAat 596.924 kb on + strand, within solAat 597.026 kb on + strand, within solAat 597.121 kb on + strand, within solAat 597.168 kb on + strand, within solA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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595,017 - pyrC OKFHMN_03730 0.63 -3.2
595,190 + pyrC OKFHMN_03730 0.80 -3.8
595,426 + +0.9
595,475 + -0.7
595,723 - -1.0
595,823 + +1.2
595,824 - -1.9
595,934 + -0.4
596,076 + bssS OKFHMN_03740 0.25 -0.1
596,325 + -0.6
596,326 - -0.3
596,539 + solA OKFHMN_03745 0.14 +0.2
596,540 - solA OKFHMN_03745 0.14 -1.1
596,924 + solA OKFHMN_03745 0.49 -0.5
597,026 + solA OKFHMN_03745 0.58 -0.9
597,121 + solA OKFHMN_03745 0.66 -0.7
597,168 + solA OKFHMN_03745 0.70 -0.2

Or see this region's nucleotide sequence