Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ndh and ycfP are separated by 399 nucleotides ycfP and nagZ are separated by 22 nucleotides nagZ and thiK are separated by 10 nucleotides thiK and lpoB overlap by 20 nucleotides
OKFHMN_03495: ndh - NADH-quinone dehydrogenase, at 549,617 to 550,921
ndh
OKFHMN_03500: ycfP - alpha/beta hydrolase YcfP, at 551,321 to 551,863
ycfP
OKFHMN_03505: nagZ - beta-N-acetylhexosaminidase, at 551,886 to 552,911
nagZ
OKFHMN_03510: thiK - thiamine kinase, at 552,922 to 553,746
thiK
OKFHMN_03515: lpoB - penicillin-binding protein activator LpoB, at 553,727 to 554,368
lpoB
Position (kb) 551
552
553 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 550.995 kb on - strand at 551.027 kb on + strand at 551.065 kb on + strand at 551.178 kb on + strand at 551.178 kb on + strand at 551.182 kb on + strand at 551.194 kb on + strand at 551.195 kb on - strand at 551.416 kb on - strand, within ycfP at 551.524 kb on + strand, within ycfP at 551.525 kb on - strand, within ycfP at 551.763 kb on + strand, within ycfP at 551.769 kb on - strand, within ycfP at 551.769 kb on - strand, within ycfP at 551.778 kb on - strand, within ycfP at 551.834 kb on - strand at 551.923 kb on - strand at 551.997 kb on - strand, within nagZ at 552.266 kb on - strand, within nagZ at 552.285 kb on - strand, within nagZ at 552.536 kb on + strand, within nagZ at 552.806 kb on - strand, within nagZ at 552.932 kb on - strand at 553.064 kb on - strand, within thiK at 553.098 kb on - strand, within thiK at 553.246 kb on - strand, within thiK at 553.259 kb on - strand, within thiK at 553.259 kb on - strand, within thiK at 553.413 kb on - strand, within thiK at 553.416 kb on - strand, within thiK at 553.416 kb on - strand, within thiK at 553.440 kb on + strand, within thiK at 553.505 kb on - strand, within thiK at 553.505 kb on - strand, within thiK at 553.659 kb on + strand, within thiK at 553.663 kb on - strand, within thiK at 553.800 kb on - strand, within lpoB at 553.883 kb on - strand, within lpoB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 550,995 - -1.0 551,027 + +1.5 551,065 + +1.2 551,178 + +0.5 551,178 + +0.4 551,182 + -0.1 551,194 + +1.4 551,195 - -0.4 551,416 - ycfP OKFHMN_03500 0.17 +0.3 551,524 + ycfP OKFHMN_03500 0.37 +0.7 551,525 - ycfP OKFHMN_03500 0.38 +0.7 551,763 + ycfP OKFHMN_03500 0.81 +0.5 551,769 - ycfP OKFHMN_03500 0.83 -0.2 551,769 - ycfP OKFHMN_03500 0.83 -1.5 551,778 - ycfP OKFHMN_03500 0.84 +0.3 551,834 - +0.1 551,923 - -0.4 551,997 - nagZ OKFHMN_03505 0.11 -1.6 552,266 - nagZ OKFHMN_03505 0.37 +0.4 552,285 - nagZ OKFHMN_03505 0.39 +0.3 552,536 + nagZ OKFHMN_03505 0.63 -0.2 552,806 - nagZ OKFHMN_03505 0.90 -0.5 552,932 - +0.0 553,064 - thiK OKFHMN_03510 0.17 +0.7 553,098 - thiK OKFHMN_03510 0.21 -1.8 553,246 - thiK OKFHMN_03510 0.39 -0.5 553,259 - thiK OKFHMN_03510 0.41 -0.0 553,259 - thiK OKFHMN_03510 0.41 +0.2 553,413 - thiK OKFHMN_03510 0.60 -0.3 553,416 - thiK OKFHMN_03510 0.60 -4.9 553,416 - thiK OKFHMN_03510 0.60 -0.7 553,440 + thiK OKFHMN_03510 0.63 -0.2 553,505 - thiK OKFHMN_03510 0.71 -0.1 553,505 - thiK OKFHMN_03510 0.71 -1.1 553,659 + thiK OKFHMN_03510 0.89 -0.1 553,663 - thiK OKFHMN_03510 0.90 +0.6 553,800 - lpoB OKFHMN_03515 0.11 -0.1 553,883 - lpoB OKFHMN_03515 0.24 -0.3
Or see this region's nucleotide sequence