Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02530

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpdeR and yciZ are separated by 147 nucleotidesyciZ and yciT are separated by 89 nucleotides OKFHMN_02525: pdeR - cyclic di-GMP phosphodiesterase, at 397,467 to 399,452 pdeR OKFHMN_02530: yciZ - UPF0509 protein YciZ, at 399,600 to 399,773 yciZ OKFHMN_02535: yciT - DNA-binding transcriptional regulator YciT, at 399,863 to 400,612 yciT Position (kb) 399 400Strain fitness (log2 ratio) -1 0 1at 399.322 kb on + strandat 399.466 kb on + strandat 399.689 kb on + strand, within yciZat 399.700 kb on + strand, within yciZat 400.070 kb on + strand, within yciTat 400.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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399,322 + +0.1
399,466 + +0.1
399,689 + yciZ OKFHMN_02530 0.51 +0.4
399,700 + yciZ OKFHMN_02530 0.57 -0.4
400,070 + yciT OKFHMN_02535 0.28 -1.3
400,663 - -0.4

Or see this region's nucleotide sequence