Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02500

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntadeB and acrA overlap by 1 nucleotidesacrA and acrR are separated by 148 nucleotides OKFHMN_02495: adeB - hydrophobe/amphiphile efflux-1 family RND transporter, at 387,775 to 390,858 adeB OKFHMN_02500: acrA - efflux transporter periplasmic adaptor subunit, at 390,858 to 391,979 acrA OKFHMN_02505: acrR - TetR family transcriptional regulator, at 392,128 to 392,694 acrR Position (kb) 390 391 392Strain fitness (log2 ratio) -2 -1 0 1at 390.039 kb on - strand, within adeBat 390.205 kb on + strand, within adeBat 390.710 kb on + strandat 391.496 kb on + strand, within acrAat 391.801 kb on - strand, within acrAat 391.914 kb on - strandat 392.118 kb on - strandat 392.165 kb on - strandat 392.425 kb on - strand, within acrRat 392.596 kb on - strand, within acrRat 392.750 kb on + strandat 392.786 kb on + strandat 392.787 kb on - strandat 392.800 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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390,039 - adeB OKFHMN_02495 0.73 +0.4
390,205 + adeB OKFHMN_02495 0.79 +0.9
390,710 + -0.8
391,496 + acrA OKFHMN_02500 0.57 -1.4
391,801 - acrA OKFHMN_02500 0.84 -0.9
391,914 - -0.4
392,118 - -0.8
392,165 - +1.0
392,425 - acrR OKFHMN_02505 0.52 -0.8
392,596 - acrR OKFHMN_02505 0.83 +0.4
392,750 + -1.8
392,786 + +0.1
392,787 - -0.4
392,800 - +0.4

Or see this region's nucleotide sequence