Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02205

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntabgR and abgA are separated by 175 nucleotidesabgA and abgB overlap by 1 nucleotides OKFHMN_02200: abgR - LysR family transcriptional regulator, at 330,032 to 330,940 abgR OKFHMN_02205: abgA - p-aminobenzoyl-glutamate hydrolase subunit AbgA, at 331,116 to 332,426 abgA OKFHMN_02210: abgB - p-aminobenzoyl-glutamate hydrolase subunit AbgB, at 332,426 to 333,871 abgB Position (kb) 331 332 333Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 330.124 kb on - strand, within abgRat 330.491 kb on - strand, within abgRat 330.650 kb on - strand, within abgRat 330.718 kb on + strand, within abgRat 331.020 kb on + strandat 331.188 kb on + strandat 331.309 kb on + strand, within abgAat 331.327 kb on + strand, within abgAat 331.627 kb on + strand, within abgAat 331.628 kb on - strand, within abgAat 331.727 kb on + strand, within abgAat 332.091 kb on + strand, within abgAat 332.091 kb on + strand, within abgAat 332.091 kb on + strand, within abgAat 332.091 kb on + strand, within abgAat 332.091 kb on + strand, within abgAat 332.091 kb on + strand, within abgAat 332.480 kb on + strandat 332.605 kb on + strand, within abgBat 332.669 kb on + strand, within abgBat 332.846 kb on + strand, within abgBat 332.846 kb on + strand, within abgBat 333.107 kb on - strand, within abgBat 333.107 kb on - strand, within abgBat 333.109 kb on + strand, within abgBat 333.127 kb on - strand, within abgBat 333.127 kb on - strand, within abgBat 333.146 kb on - strand, within abgBat 333.232 kb on + strand, within abgBat 333.324 kb on - strand, within abgBat 333.356 kb on + strand, within abgBat 333.357 kb on - strand, within abgB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
330,124 - abgR OKFHMN_02200 0.10 -1.2
330,491 - abgR OKFHMN_02200 0.50 -0.2
330,650 - abgR OKFHMN_02200 0.68 -0.5
330,718 + abgR OKFHMN_02200 0.75 +0.2
331,020 + -1.9
331,188 + +0.1
331,309 + abgA OKFHMN_02205 0.15 +0.9
331,327 + abgA OKFHMN_02205 0.16 -0.9
331,627 + abgA OKFHMN_02205 0.39 +1.4
331,628 - abgA OKFHMN_02205 0.39 -4.9
331,727 + abgA OKFHMN_02205 0.47 +0.5
332,091 + abgA OKFHMN_02205 0.74 +0.1
332,091 + abgA OKFHMN_02205 0.74 -0.0
332,091 + abgA OKFHMN_02205 0.74 -0.3
332,091 + abgA OKFHMN_02205 0.74 -1.7
332,091 + abgA OKFHMN_02205 0.74 +0.2
332,091 + abgA OKFHMN_02205 0.74 +2.1
332,480 + -1.7
332,605 + abgB OKFHMN_02210 0.12 +0.7
332,669 + abgB OKFHMN_02210 0.17 +0.1
332,846 + abgB OKFHMN_02210 0.29 -1.7
332,846 + abgB OKFHMN_02210 0.29 -0.8
333,107 - abgB OKFHMN_02210 0.47 +1.8
333,107 - abgB OKFHMN_02210 0.47 -0.0
333,109 + abgB OKFHMN_02210 0.47 +0.4
333,127 - abgB OKFHMN_02210 0.48 +0.1
333,127 - abgB OKFHMN_02210 0.48 -1.1
333,146 - abgB OKFHMN_02210 0.50 -0.1
333,232 + abgB OKFHMN_02210 0.56 -1.8
333,324 - abgB OKFHMN_02210 0.62 +0.6
333,356 + abgB OKFHMN_02210 0.64 -0.6
333,357 - abgB OKFHMN_02210 0.64 +0.9

Or see this region's nucleotide sequence