Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt adhP and yddM are separated by 145 nucleotides yddM and fdnI are separated by 227 nucleotides fdnI and fdnH overlap by 8 nucleotides fdnH and fdnG are separated by 12 nucleotides
OKFHMN_01365: adhP - alcohol dehydrogenase AdhP, at 175,976 to 176,986
adhP
OKFHMN_01370: yddM - HigA family addiction module antitoxin, at 177,132 to 177,416
yddM
OKFHMN_01375: fdnI - formate dehydrogenase-N subunit gamma, at 177,644 to 178,297
fdnI
OKFHMN_01380: fdnH - formate dehydrogenase N subunit beta, at 178,290 to 179,174
fdnH
OKFHMN_01385: fdnG - formate dehydrogenase-N subunit alpha, at 179,187 to 182,234
fdnG
Position (kb) 177
178
179 Strain fitness (log2 ratio) -1
0
1 at 176.677 kb on - strand, within adhP at 177.191 kb on + strand, within yddM at 177.191 kb on + strand, within yddM at 177.577 kb on + strand at 177.577 kb on + strand at 177.646 kb on - strand at 177.786 kb on + strand, within fdnI at 177.786 kb on + strand, within fdnI at 177.787 kb on - strand, within fdnI at 177.995 kb on - strand, within fdnI at 178.292 kb on - strand at 178.499 kb on - strand, within fdnH at 179.275 kb on - strand at 179.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 176,677 - adhP OKFHMN_01365 0.69 -1.0 177,191 + yddM OKFHMN_01370 0.21 -1.0 177,191 + yddM OKFHMN_01370 0.21 +0.6 177,577 + +1.1 177,577 + -0.8 177,646 - -0.1 177,786 + fdnI OKFHMN_01375 0.22 -0.1 177,786 + fdnI OKFHMN_01375 0.22 -1.1 177,787 - fdnI OKFHMN_01375 0.22 +0.2 177,995 - fdnI OKFHMN_01375 0.54 +0.6 178,292 - -0.2 178,499 - fdnH OKFHMN_01380 0.24 +0.0 179,275 - +0.6 179,277 - +0.7
Or see this region's nucleotide sequence