Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01130

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgGDEF and uxaB are separated by 226 nucleotidesuxaB and yneE are separated by 196 nucleotides OKFHMN_01125: gGDEF - diguanylate cyclase, at 112,369 to 113,787 gGDEF OKFHMN_01130: uxaB - tagaturonate reductase, at 114,014 to 115,465 uxaB OKFHMN_01135: yneE - UPF0187 protein YneE, at 115,662 to 116,576 yneE Position (kb) 114 115 116Strain fitness (log2 ratio) -1 0 1at 114.437 kb on + strand, within uxaBat 114.475 kb on + strand, within uxaBat 115.329 kb on + strandat 115.496 kb on + strandat 116.226 kb on - strand, within yneE

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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114,437 + uxaB OKFHMN_01130 0.29 +0.8
114,475 + uxaB OKFHMN_01130 0.32 +1.1
115,329 + +0.2
115,496 + +1.0
116,226 - yneE OKFHMN_01135 0.62 +0.1

Or see this region's nucleotide sequence