Strain Fitness in Escherichia coli ECRC100 around OKFHMN_00765

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nticd and int are separated by 113 nucleotidesint and xis overlap by 11 nucleotidesxis and OKFHMN_00775 are separated by 103 nucleotides OKFHMN_00760: icd - NADP-dependent isocitrate dehydrogenase, at 53,298 to 54,548 icd OKFHMN_00765: int - Integrase, at 54,662 to 55,804 int OKFHMN_00770: xis - Excisionase, at 55,794 to 56,030 xis OKFHMN_00775: OKFHMN_00775 - replication protein, at 56,134 to 56,958 _00775 Position (kb) 54 55 56Strain fitness (log2 ratio) -1 0 1at 55.193 kb on + strand, within intat 56.101 kb on + strandat 56.522 kb on + strand, within OKFHMN_00775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
55,193 + int OKFHMN_00765 0.46 -0.2
56,101 + +1.1
56,522 + OKFHMN_00775 0.47 +0.3

Or see this region's nucleotide sequence