Strain Fitness in Escherichia coli ECRC62 around BNILDI_22785

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntxseB and ispA overlap by 1 nucleotidesispA and dxs are separated by 24 nucleotidesdxs and yajO are separated by 179 nucleotides BNILDI_22775: xseB - exodeoxyribonuclease VII small subunit, at 4,583,636 to 4,583,878 xseB BNILDI_22780: ispA - (2E,6E)-farnesyl diphosphate synthase, at 4,583,878 to 4,584,777 ispA BNILDI_22785: dxs - 1-deoxy-D-xylulose-5-phosphate synthase, at 4,584,802 to 4,586,664 dxs BNILDI_22790: yajO - 1-deoxyxylulose-5-phosphate synthase YajO, at 4,586,844 to 4,587,818 yajO Position (kb) 4584 4585 4586 4587Strain fitness (log2 ratio) -2 -1 0 1at 4586.710 kb on + strandat 4586.715 kb on - strandat 4586.762 kb on - strandat 4586.762 kb on - strandat 4586.762 kb on - strandat 4586.765 kb on + strandat 4586.765 kb on + strandat 4586.765 kb on + strandat 4586.765 kb on + strandat 4586.766 kb on - strandat 4586.766 kb on - strandat 4586.766 kb on - strandat 4586.766 kb on - strandat 4586.770 kb on - strandat 4586.818 kb on - strandat 4586.850 kb on + strandat 4587.020 kb on + strand, within yajOat 4587.021 kb on - strand, within yajOat 4587.021 kb on - strand, within yajOat 4587.024 kb on + strand, within yajOat 4587.025 kb on - strand, within yajOat 4587.280 kb on + strand, within yajOat 4587.303 kb on - strand, within yajOat 4587.381 kb on - strand, within yajOat 4587.386 kb on + strand, within yajOat 4587.399 kb on + strand, within yajOat 4587.399 kb on + strand, within yajO

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,586,710 + -1.1
4,586,715 - +0.5
4,586,762 - -0.2
4,586,762 - +0.1
4,586,762 - -1.5
4,586,765 + +0.2
4,586,765 + +0.0
4,586,765 + -0.3
4,586,765 + -0.3
4,586,766 - -1.9
4,586,766 - +0.4
4,586,766 - +0.3
4,586,766 - +0.3
4,586,770 - +0.8
4,586,818 - -0.3
4,586,850 + +0.5
4,587,020 + yajO BNILDI_22790 0.18 +0.6
4,587,021 - yajO BNILDI_22790 0.18 -0.5
4,587,021 - yajO BNILDI_22790 0.18 -0.3
4,587,024 + yajO BNILDI_22790 0.18 +0.7
4,587,025 - yajO BNILDI_22790 0.19 +0.2
4,587,280 + yajO BNILDI_22790 0.45 +0.7
4,587,303 - yajO BNILDI_22790 0.47 +0.3
4,587,381 - yajO BNILDI_22790 0.55 +0.1
4,587,386 + yajO BNILDI_22790 0.56 -0.1
4,587,399 + yajO BNILDI_22790 0.57 +0.1
4,587,399 + yajO BNILDI_22790 0.57 -0.9

Or see this region's nucleotide sequence