Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fepD and fepG overlap by 4 nucleotides fepG and fepC overlap by 4 nucleotides fepC and fepE overlap by 4 nucleotides
BNILDI_21975: fepD - ferrienterobactin ABC transporter permease, at 4,417,599 to 4,418,603
fepD
BNILDI_21980: fepG - iron-enterobactin ABC transporter permease, at 4,418,600 to 4,419,592
fepG
BNILDI_21985: fepC - ferrienterobactin ABC transporter ATPase, at 4,419,589 to 4,420,404
fepC
BNILDI_21990: fepE - LPS O-antigen length regulator, at 4,420,401 to 4,421,534
fepE
Position (kb) 4419
4420
4421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4418.749 kb on + strand, within fepG at 4419.082 kb on + strand, within fepG at 4419.082 kb on + strand, within fepG at 4419.199 kb on + strand, within fepG at 4419.499 kb on + strand at 4419.646 kb on + strand at 4419.648 kb on + strand at 4419.678 kb on - strand, within fepC at 4419.724 kb on - strand, within fepC at 4419.808 kb on + strand, within fepC at 4419.817 kb on - strand, within fepC at 4419.927 kb on + strand, within fepC at 4419.928 kb on - strand, within fepC at 4420.081 kb on - strand, within fepC at 4420.081 kb on - strand, within fepC at 4420.134 kb on - strand, within fepC at 4420.174 kb on - strand, within fepC at 4420.200 kb on + strand, within fepC at 4420.309 kb on + strand, within fepC at 4420.398 kb on + strand at 4420.407 kb on + strand at 4420.408 kb on - strand at 4420.408 kb on - strand at 4420.408 kb on - strand at 4420.408 kb on - strand at 4420.961 kb on + strand, within fepE at 4421.006 kb on + strand, within fepE at 4421.028 kb on - strand, within fepE at 4421.029 kb on + strand, within fepE at 4421.030 kb on - strand, within fepE at 4421.159 kb on - strand, within fepE at 4421.159 kb on - strand, within fepE at 4421.159 kb on - strand, within fepE at 4421.159 kb on - strand, within fepE at 4421.234 kb on + strand, within fepE at 4421.274 kb on - strand, within fepE
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,418,749 + fepG BNILDI_21980 0.15 +0.1 4,419,082 + fepG BNILDI_21980 0.49 -0.2 4,419,082 + fepG BNILDI_21980 0.49 +0.6 4,419,199 + fepG BNILDI_21980 0.60 -0.5 4,419,499 + -0.1 4,419,646 + -3.4 4,419,648 + -0.2 4,419,678 - fepC BNILDI_21985 0.11 -1.0 4,419,724 - fepC BNILDI_21985 0.17 +0.2 4,419,808 + fepC BNILDI_21985 0.27 +0.1 4,419,817 - fepC BNILDI_21985 0.28 +0.2 4,419,927 + fepC BNILDI_21985 0.41 -0.2 4,419,928 - fepC BNILDI_21985 0.42 +1.3 4,420,081 - fepC BNILDI_21985 0.60 -0.9 4,420,081 - fepC BNILDI_21985 0.60 +0.6 4,420,134 - fepC BNILDI_21985 0.67 +0.0 4,420,174 - fepC BNILDI_21985 0.72 -0.8 4,420,200 + fepC BNILDI_21985 0.75 +1.9 4,420,309 + fepC BNILDI_21985 0.88 +0.7 4,420,398 + +0.5 4,420,407 + -0.3 4,420,408 - -0.2 4,420,408 - +0.5 4,420,408 - +0.2 4,420,408 - +1.6 4,420,961 + fepE BNILDI_21990 0.49 -0.6 4,421,006 + fepE BNILDI_21990 0.53 +0.0 4,421,028 - fepE BNILDI_21990 0.55 -1.5 4,421,029 + fepE BNILDI_21990 0.55 -1.2 4,421,030 - fepE BNILDI_21990 0.55 +0.1 4,421,159 - fepE BNILDI_21990 0.67 +0.3 4,421,159 - fepE BNILDI_21990 0.67 -2.8 4,421,159 - fepE BNILDI_21990 0.67 -1.3 4,421,159 - fepE BNILDI_21990 0.67 -0.2 4,421,234 + fepE BNILDI_21990 0.73 -0.1 4,421,274 - fepE BNILDI_21990 0.77 +0.2
Or see this region's nucleotide sequence