Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt entA and entB overlap by 1 nucleotides entB and entE are separated by 13 nucleotides entE and entC are separated by 9 nucleotides
BNILDI_21945: entA - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase EntA, at 4,410,491 to 4,411,237
entA
BNILDI_21950: entB - enterobactin biosynthesis bifunctional isochorismatase/aryl carrier protein EntB, at 4,411,237 to 4,412,094
entB
BNILDI_21955: entE - (2,3-dihydroxybenzoyl)adenylate synthase EntE, at 4,412,108 to 4,413,718
entE
BNILDI_21960: entC - isochorismate synthase 1, at 4,413,728 to 4,414,903
entC
Position (kb) 4412
4413
4414 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4411.222 kb on + strand at 4411.259 kb on - strand at 4411.259 kb on - strand at 4411.374 kb on - strand, within entB at 4411.520 kb on + strand, within entB at 4411.588 kb on - strand, within entB at 4411.588 kb on - strand, within entB at 4411.599 kb on + strand, within entB at 4411.599 kb on + strand, within entB at 4411.623 kb on + strand, within entB at 4411.623 kb on + strand, within entB at 4411.640 kb on + strand, within entB at 4411.641 kb on - strand, within entB at 4411.653 kb on + strand, within entB at 4411.666 kb on - strand, within entB at 4411.815 kb on + strand, within entB at 4411.815 kb on + strand, within entB at 4411.815 kb on + strand, within entB at 4411.917 kb on + strand, within entB at 4412.034 kb on + strand at 4412.069 kb on + strand at 4412.280 kb on - strand, within entE at 4412.344 kb on - strand, within entE at 4412.344 kb on - strand, within entE at 4412.449 kb on - strand, within entE at 4412.680 kb on + strand, within entE at 4412.697 kb on + strand, within entE at 4412.698 kb on - strand, within entE at 4412.805 kb on - strand, within entE at 4412.805 kb on - strand, within entE at 4413.012 kb on + strand, within entE at 4413.012 kb on + strand, within entE at 4413.012 kb on + strand, within entE at 4413.012 kb on + strand, within entE at 4413.079 kb on + strand, within entE at 4413.093 kb on + strand, within entE at 4413.094 kb on - strand, within entE at 4413.097 kb on - strand, within entE at 4413.099 kb on + strand, within entE at 4413.298 kb on + strand, within entE at 4413.299 kb on - strand, within entE at 4413.375 kb on + strand, within entE at 4413.455 kb on - strand, within entE at 4413.457 kb on + strand, within entE at 4413.459 kb on + strand, within entE at 4413.459 kb on + strand, within entE at 4413.460 kb on - strand, within entE at 4413.486 kb on - strand, within entE at 4413.530 kb on - strand, within entE at 4413.530 kb on - strand, within entE at 4413.757 kb on + strand at 4413.757 kb on + strand at 4414.096 kb on + strand, within entC at 4414.124 kb on + strand, within entC at 4414.124 kb on + strand, within entC at 4414.125 kb on - strand, within entC at 4414.304 kb on + strand, within entC at 4414.304 kb on + strand, within entC at 4414.305 kb on - strand, within entC at 4414.636 kb on + strand, within entC at 4414.638 kb on + strand, within entC at 4414.639 kb on - strand, within entC at 4414.639 kb on - strand, within entC at 4414.639 kb on - strand, within entC at 4414.639 kb on - strand, within entC at 4414.639 kb on - strand, within entC
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,411,222 + +0.6 4,411,259 - +0.2 4,411,259 - -0.1 4,411,374 - entB BNILDI_21950 0.16 +1.2 4,411,520 + entB BNILDI_21950 0.33 +0.6 4,411,588 - entB BNILDI_21950 0.41 +0.2 4,411,588 - entB BNILDI_21950 0.41 -0.9 4,411,599 + entB BNILDI_21950 0.42 -0.3 4,411,599 + entB BNILDI_21950 0.42 -0.3 4,411,623 + entB BNILDI_21950 0.45 +0.8 4,411,623 + entB BNILDI_21950 0.45 +0.7 4,411,640 + entB BNILDI_21950 0.47 -0.1 4,411,641 - entB BNILDI_21950 0.47 +0.0 4,411,653 + entB BNILDI_21950 0.48 -0.0 4,411,666 - entB BNILDI_21950 0.50 +1.3 4,411,815 + entB BNILDI_21950 0.67 -0.3 4,411,815 + entB BNILDI_21950 0.67 -0.1 4,411,815 + entB BNILDI_21950 0.67 -0.2 4,411,917 + entB BNILDI_21950 0.79 -0.0 4,412,034 + -0.8 4,412,069 + +0.9 4,412,280 - entE BNILDI_21955 0.11 -1.3 4,412,344 - entE BNILDI_21955 0.15 -0.3 4,412,344 - entE BNILDI_21955 0.15 -0.5 4,412,449 - entE BNILDI_21955 0.21 -0.6 4,412,680 + entE BNILDI_21955 0.36 -3.8 4,412,697 + entE BNILDI_21955 0.37 -1.1 4,412,698 - entE BNILDI_21955 0.37 -0.0 4,412,805 - entE BNILDI_21955 0.43 -0.4 4,412,805 - entE BNILDI_21955 0.43 +0.4 4,413,012 + entE BNILDI_21955 0.56 +0.6 4,413,012 + entE BNILDI_21955 0.56 +0.3 4,413,012 + entE BNILDI_21955 0.56 +0.1 4,413,012 + entE BNILDI_21955 0.56 -0.2 4,413,079 + entE BNILDI_21955 0.60 +0.5 4,413,093 + entE BNILDI_21955 0.61 +0.1 4,413,094 - entE BNILDI_21955 0.61 -0.1 4,413,097 - entE BNILDI_21955 0.61 -0.3 4,413,099 + entE BNILDI_21955 0.62 +0.9 4,413,298 + entE BNILDI_21955 0.74 +0.1 4,413,299 - entE BNILDI_21955 0.74 +0.3 4,413,375 + entE BNILDI_21955 0.79 -0.1 4,413,455 - entE BNILDI_21955 0.84 +0.5 4,413,457 + entE BNILDI_21955 0.84 -0.1 4,413,459 + entE BNILDI_21955 0.84 -0.2 4,413,459 + entE BNILDI_21955 0.84 -1.1 4,413,460 - entE BNILDI_21955 0.84 +0.3 4,413,486 - entE BNILDI_21955 0.86 -2.5 4,413,530 - entE BNILDI_21955 0.88 +0.1 4,413,530 - entE BNILDI_21955 0.88 -0.0 4,413,757 + +0.6 4,413,757 + +0.2 4,414,096 + entC BNILDI_21960 0.31 +1.4 4,414,124 + entC BNILDI_21960 0.34 -2.0 4,414,124 + entC BNILDI_21960 0.34 -0.1 4,414,125 - entC BNILDI_21960 0.34 -0.3 4,414,304 + entC BNILDI_21960 0.49 -1.8 4,414,304 + entC BNILDI_21960 0.49 -3.2 4,414,305 - entC BNILDI_21960 0.49 +0.8 4,414,636 + entC BNILDI_21960 0.77 +0.2 4,414,638 + entC BNILDI_21960 0.77 +0.1 4,414,639 - entC BNILDI_21960 0.77 -0.9 4,414,639 - entC BNILDI_21960 0.77 +0.1 4,414,639 - entC BNILDI_21960 0.77 +1.2 4,414,639 - entC BNILDI_21960 0.77 -0.1 4,414,639 - entC BNILDI_21960 0.77 -0.1
Or see this region's nucleotide sequence