Strain Fitness in Escherichia coli ECRC62 around BNILDI_21355

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybgQ and fimC are separated by 14 nucleotidesfimC and BNILDI_21360 overlap by 4 nucleotides BNILDI_21350: ybgQ - Uncharacterized outer membrane usher protein YbgQ, at 4,293,502 to 4,295,952 ybgQ BNILDI_21355: fimC - molecular chaperone, at 4,295,967 to 4,296,698 fimC BNILDI_21360: BNILDI_21360 - hypothetical protein, at 4,296,695 to 4,297,756 _21360 Position (kb) 4295 4296 4297Strain fitness (log2 ratio) -2 -1 0 1at 4294.970 kb on + strand, within ybgQat 4295.082 kb on + strand, within ybgQat 4295.083 kb on - strand, within ybgQat 4295.107 kb on - strand, within ybgQat 4295.147 kb on - strand, within ybgQat 4295.147 kb on - strand, within ybgQat 4295.209 kb on - strand, within ybgQat 4295.259 kb on + strand, within ybgQat 4295.262 kb on + strand, within ybgQat 4295.374 kb on + strand, within ybgQat 4295.375 kb on - strand, within ybgQat 4295.390 kb on - strand, within ybgQat 4295.511 kb on + strand, within ybgQat 4295.939 kb on + strandat 4296.032 kb on - strandat 4296.050 kb on + strand, within fimCat 4296.050 kb on + strand, within fimCat 4296.051 kb on - strand, within fimCat 4296.060 kb on - strand, within fimCat 4296.071 kb on + strand, within fimCat 4296.117 kb on + strand, within fimCat 4296.126 kb on + strand, within fimCat 4296.232 kb on + strand, within fimCat 4296.233 kb on - strand, within fimCat 4296.233 kb on - strand, within fimCat 4296.286 kb on - strand, within fimCat 4296.363 kb on - strand, within fimCat 4296.391 kb on + strand, within fimCat 4296.481 kb on - strand, within fimCat 4296.481 kb on - strand, within fimCat 4296.481 kb on - strand, within fimCat 4296.558 kb on - strand, within fimCat 4296.586 kb on - strand, within fimCat 4296.604 kb on - strand, within fimCat 4296.612 kb on + strand, within fimCat 4296.613 kb on - strand, within fimCat 4296.613 kb on - strand, within fimCat 4296.615 kb on - strand, within fimCat 4296.615 kb on - strand, within fimCat 4296.674 kb on - strandat 4296.735 kb on + strandat 4296.938 kb on + strand, within BNILDI_21360at 4296.998 kb on + strand, within BNILDI_21360at 4296.999 kb on - strand, within BNILDI_21360at 4297.013 kb on + strand, within BNILDI_21360at 4297.057 kb on + strand, within BNILDI_21360at 4297.058 kb on - strand, within BNILDI_21360at 4297.083 kb on - strand, within BNILDI_21360at 4297.084 kb on + strand, within BNILDI_21360at 4297.147 kb on + strand, within BNILDI_21360at 4297.148 kb on - strand, within BNILDI_21360at 4297.148 kb on - strand, within BNILDI_21360at 4297.162 kb on + strand, within BNILDI_21360at 4297.163 kb on - strand, within BNILDI_21360at 4297.187 kb on + strand, within BNILDI_21360at 4297.187 kb on + strand, within BNILDI_21360at 4297.187 kb on + strand, within BNILDI_21360at 4297.188 kb on - strand, within BNILDI_21360at 4297.242 kb on - strand, within BNILDI_21360at 4297.243 kb on + strand, within BNILDI_21360at 4297.244 kb on - strand, within BNILDI_21360at 4297.313 kb on - strand, within BNILDI_21360at 4297.313 kb on - strand, within BNILDI_21360at 4297.558 kb on + strand, within BNILDI_21360at 4297.601 kb on + strand, within BNILDI_21360at 4297.603 kb on + strand, within BNILDI_21360at 4297.603 kb on + strand, within BNILDI_21360at 4297.603 kb on + strand, within BNILDI_21360at 4297.603 kb on + strand, within BNILDI_21360at 4297.612 kb on + strand, within BNILDI_21360at 4297.626 kb on - strand, within BNILDI_21360at 4297.626 kb on - strand, within BNILDI_21360at 4297.696 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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4,294,970 + ybgQ BNILDI_21350 0.60 +0.0
4,295,082 + ybgQ BNILDI_21350 0.64 -0.3
4,295,083 - ybgQ BNILDI_21350 0.65 -0.2
4,295,107 - ybgQ BNILDI_21350 0.65 -0.1
4,295,147 - ybgQ BNILDI_21350 0.67 +0.1
4,295,147 - ybgQ BNILDI_21350 0.67 +0.2
4,295,209 - ybgQ BNILDI_21350 0.70 +0.5
4,295,259 + ybgQ BNILDI_21350 0.72 +0.4
4,295,262 + ybgQ BNILDI_21350 0.72 -0.4
4,295,374 + ybgQ BNILDI_21350 0.76 +1.6
4,295,375 - ybgQ BNILDI_21350 0.76 +0.6
4,295,390 - ybgQ BNILDI_21350 0.77 -0.2
4,295,511 + ybgQ BNILDI_21350 0.82 +1.2
4,295,939 + +0.0
4,296,032 - -0.2
4,296,050 + fimC BNILDI_21355 0.11 -0.7
4,296,050 + fimC BNILDI_21355 0.11 +0.0
4,296,051 - fimC BNILDI_21355 0.11 -0.0
4,296,060 - fimC BNILDI_21355 0.13 -0.2
4,296,071 + fimC BNILDI_21355 0.14 +0.3
4,296,117 + fimC BNILDI_21355 0.20 -0.7
4,296,126 + fimC BNILDI_21355 0.22 +1.3
4,296,232 + fimC BNILDI_21355 0.36 +0.3
4,296,233 - fimC BNILDI_21355 0.36 -0.0
4,296,233 - fimC BNILDI_21355 0.36 +1.1
4,296,286 - fimC BNILDI_21355 0.44 -1.2
4,296,363 - fimC BNILDI_21355 0.54 -0.4
4,296,391 + fimC BNILDI_21355 0.58 +0.8
4,296,481 - fimC BNILDI_21355 0.70 -0.7
4,296,481 - fimC BNILDI_21355 0.70 +0.3
4,296,481 - fimC BNILDI_21355 0.70 -0.1
4,296,558 - fimC BNILDI_21355 0.81 +0.3
4,296,586 - fimC BNILDI_21355 0.85 +0.2
4,296,604 - fimC BNILDI_21355 0.87 -0.4
4,296,612 + fimC BNILDI_21355 0.88 -0.2
4,296,613 - fimC BNILDI_21355 0.88 -1.3
4,296,613 - fimC BNILDI_21355 0.88 -0.8
4,296,615 - fimC BNILDI_21355 0.89 -0.3
4,296,615 - fimC BNILDI_21355 0.89 -0.2
4,296,674 - -2.0
4,296,735 + -0.1
4,296,938 + BNILDI_21360 0.23 +0.1
4,296,998 + BNILDI_21360 0.29 +0.0
4,296,999 - BNILDI_21360 0.29 +0.2
4,297,013 + BNILDI_21360 0.30 +0.8
4,297,057 + BNILDI_21360 0.34 +1.6
4,297,058 - BNILDI_21360 0.34 -0.1
4,297,083 - BNILDI_21360 0.37 +0.0
4,297,084 + BNILDI_21360 0.37 -0.2
4,297,147 + BNILDI_21360 0.43 +0.4
4,297,148 - BNILDI_21360 0.43 -2.2
4,297,148 - BNILDI_21360 0.43 -1.7
4,297,162 + BNILDI_21360 0.44 -0.3
4,297,163 - BNILDI_21360 0.44 -0.8
4,297,187 + BNILDI_21360 0.46 -0.3
4,297,187 + BNILDI_21360 0.46 -1.4
4,297,187 + BNILDI_21360 0.46 -1.4
4,297,188 - BNILDI_21360 0.46 -0.7
4,297,242 - BNILDI_21360 0.52 +0.3
4,297,243 + BNILDI_21360 0.52 -0.0
4,297,244 - BNILDI_21360 0.52 -0.8
4,297,313 - BNILDI_21360 0.58 -0.4
4,297,313 - BNILDI_21360 0.58 +0.6
4,297,558 + BNILDI_21360 0.81 +0.2
4,297,601 + BNILDI_21360 0.85 +0.2
4,297,603 + BNILDI_21360 0.85 -0.0
4,297,603 + BNILDI_21360 0.85 +1.0
4,297,603 + BNILDI_21360 0.85 +1.0
4,297,603 + BNILDI_21360 0.85 +0.7
4,297,612 + BNILDI_21360 0.86 -2.5
4,297,626 - BNILDI_21360 0.88 -0.7
4,297,626 - BNILDI_21360 0.88 +0.9
4,297,696 + +0.4

Or see this region's nucleotide sequence