Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhS and ybhR are separated by 10 nucleotides ybhR and ybhQ overlap by 39 nucleotides ybhQ and ybhP are separated by 132 nucleotides
BNILDI_20945: ybhS - putative multidrug ABC transporter permease YbhS, at 4,217,086 to 4,218,219
ybhS
BNILDI_20950: ybhR - putative multidrug ABC transporter permease YbhR, at 4,218,230 to 4,219,336
ybhR
BNILDI_20955: ybhQ - Inner membrane protein YbhQ, at 4,219,298 to 4,219,708
ybhQ
BNILDI_20960: ybhP - Uncharacterized protein YbhP, at 4,219,841 to 4,220,602
ybhP
Position (kb) 4218
4219
4220 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4217.506 kb on + strand, within ybhS at 4217.578 kb on - strand, within ybhS at 4217.631 kb on + strand, within ybhS at 4217.772 kb on + strand, within ybhS at 4217.772 kb on + strand, within ybhS at 4217.772 kb on + strand, within ybhS at 4217.785 kb on + strand, within ybhS at 4217.788 kb on + strand, within ybhS at 4217.788 kb on + strand, within ybhS at 4217.820 kb on + strand, within ybhS at 4217.820 kb on + strand, within ybhS at 4217.820 kb on + strand, within ybhS at 4217.901 kb on - strand, within ybhS at 4218.061 kb on + strand, within ybhS at 4218.061 kb on + strand, within ybhS at 4218.061 kb on + strand, within ybhS at 4218.062 kb on - strand, within ybhS at 4218.062 kb on - strand, within ybhS at 4218.062 kb on - strand, within ybhS at 4218.066 kb on + strand, within ybhS at 4218.244 kb on - strand at 4218.312 kb on + strand at 4218.313 kb on - strand at 4218.323 kb on - strand at 4218.323 kb on - strand at 4218.387 kb on - strand, within ybhR at 4218.387 kb on - strand, within ybhR at 4218.517 kb on - strand, within ybhR at 4218.519 kb on + strand, within ybhR at 4218.519 kb on + strand, within ybhR at 4218.692 kb on - strand, within ybhR at 4218.723 kb on - strand, within ybhR at 4218.740 kb on + strand, within ybhR at 4218.741 kb on - strand, within ybhR at 4218.741 kb on - strand, within ybhR at 4218.909 kb on + strand, within ybhR at 4218.998 kb on + strand, within ybhR at 4219.017 kb on - strand, within ybhR at 4219.189 kb on + strand, within ybhR at 4219.259 kb on - strand at 4219.319 kb on - strand at 4219.334 kb on + strand at 4219.335 kb on - strand at 4219.343 kb on - strand, within ybhQ at 4219.566 kb on + strand, within ybhQ at 4219.566 kb on + strand, within ybhQ at 4219.567 kb on - strand, within ybhQ at 4219.567 kb on - strand, within ybhQ at 4219.567 kb on - strand, within ybhQ at 4219.567 kb on - strand, within ybhQ at 4219.607 kb on - strand, within ybhQ at 4219.805 kb on + strand at 4219.805 kb on + strand at 4219.818 kb on + strand at 4219.818 kb on + strand at 4219.818 kb on + strand at 4219.818 kb on + strand at 4220.210 kb on + strand, within ybhP at 4220.262 kb on + strand, within ybhP at 4220.263 kb on - strand, within ybhP at 4220.263 kb on - strand, within ybhP at 4220.263 kb on - strand, within ybhP at 4220.263 kb on - strand, within ybhP
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,217,506 + ybhS BNILDI_20945 0.37 -0.7 4,217,578 - ybhS BNILDI_20945 0.43 +0.2 4,217,631 + ybhS BNILDI_20945 0.48 +0.5 4,217,772 + ybhS BNILDI_20945 0.60 +0.1 4,217,772 + ybhS BNILDI_20945 0.60 -0.1 4,217,772 + ybhS BNILDI_20945 0.60 +0.6 4,217,785 + ybhS BNILDI_20945 0.62 -0.3 4,217,788 + ybhS BNILDI_20945 0.62 -0.4 4,217,788 + ybhS BNILDI_20945 0.62 +0.3 4,217,820 + ybhS BNILDI_20945 0.65 +0.6 4,217,820 + ybhS BNILDI_20945 0.65 +0.4 4,217,820 + ybhS BNILDI_20945 0.65 +0.5 4,217,901 - ybhS BNILDI_20945 0.72 -0.1 4,218,061 + ybhS BNILDI_20945 0.86 +0.2 4,218,061 + ybhS BNILDI_20945 0.86 -0.2 4,218,061 + ybhS BNILDI_20945 0.86 -1.2 4,218,062 - ybhS BNILDI_20945 0.86 +0.2 4,218,062 - ybhS BNILDI_20945 0.86 -0.1 4,218,062 - ybhS BNILDI_20945 0.86 -1.5 4,218,066 + ybhS BNILDI_20945 0.86 -0.9 4,218,244 - +1.2 4,218,312 + -0.0 4,218,313 - +0.6 4,218,323 - -0.1 4,218,323 - -0.8 4,218,387 - ybhR BNILDI_20950 0.14 -0.9 4,218,387 - ybhR BNILDI_20950 0.14 +1.2 4,218,517 - ybhR BNILDI_20950 0.26 -0.3 4,218,519 + ybhR BNILDI_20950 0.26 +0.6 4,218,519 + ybhR BNILDI_20950 0.26 -0.0 4,218,692 - ybhR BNILDI_20950 0.42 +0.4 4,218,723 - ybhR BNILDI_20950 0.45 +1.2 4,218,740 + ybhR BNILDI_20950 0.46 -0.1 4,218,741 - ybhR BNILDI_20950 0.46 -0.2 4,218,741 - ybhR BNILDI_20950 0.46 -0.6 4,218,909 + ybhR BNILDI_20950 0.61 -2.6 4,218,998 + ybhR BNILDI_20950 0.69 +0.5 4,219,017 - ybhR BNILDI_20950 0.71 -0.2 4,219,189 + ybhR BNILDI_20950 0.87 -0.2 4,219,259 - +0.4 4,219,319 - +1.4 4,219,334 + +0.4 4,219,335 - -0.2 4,219,343 - ybhQ BNILDI_20955 0.11 +0.3 4,219,566 + ybhQ BNILDI_20955 0.65 -0.6 4,219,566 + ybhQ BNILDI_20955 0.65 +0.4 4,219,567 - ybhQ BNILDI_20955 0.65 +0.1 4,219,567 - ybhQ BNILDI_20955 0.65 -0.3 4,219,567 - ybhQ BNILDI_20955 0.65 -2.8 4,219,567 - ybhQ BNILDI_20955 0.65 -0.0 4,219,607 - ybhQ BNILDI_20955 0.75 -0.9 4,219,805 + -0.4 4,219,805 + -0.5 4,219,818 + -0.3 4,219,818 + +0.4 4,219,818 + +0.9 4,219,818 + -0.4 4,220,210 + ybhP BNILDI_20960 0.48 -0.4 4,220,262 + ybhP BNILDI_20960 0.55 -0.0 4,220,263 - ybhP BNILDI_20960 0.55 -0.1 4,220,263 - ybhP BNILDI_20960 0.55 -0.1 4,220,263 - ybhP BNILDI_20960 0.55 +0.9 4,220,263 - ybhP BNILDI_20960 0.55 +0.4
Or see this region's nucleotide sequence