Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fiu and BNILDI_20875 are separated by 44 nucleotides BNILDI_20875 and ybiI are separated by 73 nucleotides ybiI and ybiJ are separated by 264 nucleotides ybiJ and ybiE are separated by 102 nucleotides ybiE and hcxB are separated by 66 nucleotides
BNILDI_20870: fiu - catecholate siderophore receptor Fiu, at 4,202,807 to 4,205,089
fiu
BNILDI_20875: BNILDI_20875 - PKHD-type hydroxylase YbiX, at 4,205,134 to 4,205,808
_20875
BNILDI_20880: ybiI - C4-type zinc finger protein YbiI, at 4,205,882 to 4,206,148
ybiI
BNILDI_20885: ybiJ - DUF1471 domain-containing protein, at 4,206,413 to 4,206,673
ybiJ
BNILDI_20895: ybiE - Protein YbiE, at 4,206,776 to 4,206,835
ybiE
BNILDI_20900: hcxB - hydroxycarboxylate dehydrogenase HcXB, at 4,206,902 to 4,207,987
hcxB
Position (kb) 4205
4206
4207 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4204.997 kb on - strand at 4205.003 kb on + strand at 4205.003 kb on + strand at 4205.004 kb on - strand at 4205.130 kb on + strand at 4205.130 kb on + strand at 4205.130 kb on + strand at 4205.131 kb on - strand at 4205.138 kb on - strand at 4205.138 kb on - strand at 4205.138 kb on - strand at 4205.138 kb on - strand at 4205.138 kb on - strand at 4205.251 kb on - strand, within BNILDI_20875 at 4205.287 kb on + strand, within BNILDI_20875 at 4205.407 kb on + strand, within BNILDI_20875 at 4205.408 kb on - strand, within BNILDI_20875 at 4205.584 kb on + strand, within BNILDI_20875 at 4205.585 kb on - strand, within BNILDI_20875 at 4205.646 kb on + strand, within BNILDI_20875 at 4205.646 kb on + strand, within BNILDI_20875 at 4205.647 kb on - strand, within BNILDI_20875 at 4205.647 kb on - strand, within BNILDI_20875 at 4205.676 kb on + strand, within BNILDI_20875 at 4205.849 kb on + strand at 4205.849 kb on + strand at 4205.855 kb on + strand at 4205.856 kb on - strand at 4206.058 kb on - strand, within ybiI at 4206.102 kb on - strand, within ybiI at 4206.102 kb on - strand, within ybiI at 4206.110 kb on + strand, within ybiI at 4206.142 kb on - strand at 4206.142 kb on - strand at 4206.150 kb on + strand at 4206.150 kb on + strand at 4206.150 kb on + strand at 4206.177 kb on + strand at 4206.277 kb on + strand at 4206.278 kb on - strand at 4206.383 kb on + strand at 4206.384 kb on - strand at 4206.385 kb on + strand at 4206.408 kb on + strand at 4206.412 kb on + strand at 4206.421 kb on + strand at 4206.422 kb on - strand at 4206.427 kb on + strand at 4206.517 kb on + strand, within ybiJ at 4206.611 kb on + strand, within ybiJ at 4206.646 kb on - strand, within ybiJ at 4206.668 kb on - strand at 4206.672 kb on - strand at 4206.751 kb on + strand at 4206.791 kb on - strand, within ybiE at 4206.806 kb on - strand, within ybiE at 4206.836 kb on - strand at 4206.858 kb on + strand at 4206.858 kb on + strand at 4207.070 kb on - strand, within hcxB
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,204,997 - +1.3 4,205,003 + +0.3 4,205,003 + +0.5 4,205,004 - +0.4 4,205,130 + +0.2 4,205,130 + +2.6 4,205,130 + +0.2 4,205,131 - +1.3 4,205,138 - -0.1 4,205,138 - +0.8 4,205,138 - -1.2 4,205,138 - -0.3 4,205,138 - +1.5 4,205,251 - BNILDI_20875 0.17 +0.0 4,205,287 + BNILDI_20875 0.23 -0.4 4,205,407 + BNILDI_20875 0.40 +0.0 4,205,408 - BNILDI_20875 0.41 +0.5 4,205,584 + BNILDI_20875 0.67 +0.5 4,205,585 - BNILDI_20875 0.67 +0.2 4,205,646 + BNILDI_20875 0.76 -0.9 4,205,646 + BNILDI_20875 0.76 -0.6 4,205,647 - BNILDI_20875 0.76 -0.5 4,205,647 - BNILDI_20875 0.76 -2.0 4,205,676 + BNILDI_20875 0.80 +0.4 4,205,849 + +0.4 4,205,849 + -0.6 4,205,855 + +0.1 4,205,856 - +1.8 4,206,058 - ybiI BNILDI_20880 0.66 -0.6 4,206,102 - ybiI BNILDI_20880 0.82 +0.7 4,206,102 - ybiI BNILDI_20880 0.82 -1.6 4,206,110 + ybiI BNILDI_20880 0.85 +0.4 4,206,142 - -0.6 4,206,142 - -0.2 4,206,150 + +0.4 4,206,150 + -1.7 4,206,150 + +0.7 4,206,177 + +0.7 4,206,277 + -0.0 4,206,278 - -0.5 4,206,383 + -0.9 4,206,384 - +0.4 4,206,385 + +0.6 4,206,408 + +0.5 4,206,412 + -0.9 4,206,421 + -0.8 4,206,422 - +0.5 4,206,427 + -0.4 4,206,517 + ybiJ BNILDI_20885 0.40 +0.2 4,206,611 + ybiJ BNILDI_20885 0.76 -0.8 4,206,646 - ybiJ BNILDI_20885 0.89 -0.7 4,206,668 - -0.4 4,206,672 - +0.0 4,206,751 + +0.8 4,206,791 - ybiE BNILDI_20895 0.25 -0.0 4,206,806 - ybiE BNILDI_20895 0.50 +0.3 4,206,836 - -1.2 4,206,858 + -0.3 4,206,858 + -1.1 4,207,070 - hcxB BNILDI_20900 0.15 -0.2
Or see this region's nucleotide sequence