Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_20115 and galE are separated by 47 nucleotides galE and BNILDI_20125 are separated by 76 nucleotides
BNILDI_20115: BNILDI_20115 - DUF4832 domain-containing protein, at 4,038,473 to 4,039,876
_20115
BNILDI_20120: galE - UDP-glucose 4-epimerase GalE, at 4,039,924 to 4,040,943
galE
BNILDI_20125: BNILDI_20125 - hypothetical protein, at 4,041,020 to 4,041,946
_20125
Position (kb) 4039
4040
4041 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4038.939 kb on + strand, within BNILDI_20115 at 4038.940 kb on - strand, within BNILDI_20115 at 4039.015 kb on + strand, within BNILDI_20115 at 4039.087 kb on + strand, within BNILDI_20115 at 4039.087 kb on + strand, within BNILDI_20115 at 4039.204 kb on - strand, within BNILDI_20115 at 4039.232 kb on - strand, within BNILDI_20115 at 4039.278 kb on - strand, within BNILDI_20115 at 4039.364 kb on + strand, within BNILDI_20115 at 4039.364 kb on + strand, within BNILDI_20115 at 4039.366 kb on + strand, within BNILDI_20115 at 4039.367 kb on - strand, within BNILDI_20115 at 4039.380 kb on + strand, within BNILDI_20115 at 4039.389 kb on + strand, within BNILDI_20115 at 4039.427 kb on - strand, within BNILDI_20115 at 4039.599 kb on - strand, within BNILDI_20115 at 4039.608 kb on - strand, within BNILDI_20115 at 4039.610 kb on - strand, within BNILDI_20115 at 4039.700 kb on + strand, within BNILDI_20115 at 4039.702 kb on + strand, within BNILDI_20115 at 4039.703 kb on - strand, within BNILDI_20115 at 4039.703 kb on - strand, within BNILDI_20115 at 4039.756 kb on + strand at 4039.756 kb on + strand at 4039.757 kb on - strand at 4039.758 kb on + strand at 4039.759 kb on - strand at 4040.236 kb on + strand, within galE at 4040.236 kb on + strand, within galE at 4040.236 kb on + strand, within galE at 4040.245 kb on - strand, within galE at 4040.246 kb on + strand, within galE at 4040.291 kb on + strand, within galE at 4040.292 kb on - strand, within galE at 4040.302 kb on + strand, within galE at 4040.303 kb on - strand, within galE at 4040.334 kb on + strand, within galE at 4040.334 kb on + strand, within galE at 4040.337 kb on - strand, within galE at 4040.379 kb on + strand, within galE at 4040.482 kb on - strand, within galE at 4040.483 kb on + strand, within galE at 4040.483 kb on + strand, within galE at 4040.499 kb on - strand, within galE at 4040.658 kb on - strand, within galE at 4040.909 kb on - strand at 4041.444 kb on + strand, within BNILDI_20125
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,038,939 + BNILDI_20115 0.33 -0.5 4,038,940 - BNILDI_20115 0.33 -0.1 4,039,015 + BNILDI_20115 0.39 +0.6 4,039,087 + BNILDI_20115 0.44 +0.3 4,039,087 + BNILDI_20115 0.44 -1.3 4,039,204 - BNILDI_20115 0.52 +0.5 4,039,232 - BNILDI_20115 0.54 +0.7 4,039,278 - BNILDI_20115 0.57 +0.2 4,039,364 + BNILDI_20115 0.63 +0.3 4,039,364 + BNILDI_20115 0.63 -0.7 4,039,366 + BNILDI_20115 0.64 +0.1 4,039,367 - BNILDI_20115 0.64 +0.7 4,039,380 + BNILDI_20115 0.65 -0.9 4,039,389 + BNILDI_20115 0.65 +0.0 4,039,427 - BNILDI_20115 0.68 -1.2 4,039,599 - BNILDI_20115 0.80 -0.9 4,039,608 - BNILDI_20115 0.81 -1.5 4,039,610 - BNILDI_20115 0.81 -1.1 4,039,700 + BNILDI_20115 0.87 -0.4 4,039,702 + BNILDI_20115 0.88 +0.1 4,039,703 - BNILDI_20115 0.88 +0.6 4,039,703 - BNILDI_20115 0.88 +0.5 4,039,756 + -1.1 4,039,756 + +1.1 4,039,757 - -1.4 4,039,758 + +0.4 4,039,759 - -1.0 4,040,236 + galE BNILDI_20120 0.31 +0.4 4,040,236 + galE BNILDI_20120 0.31 -3.0 4,040,236 + galE BNILDI_20120 0.31 +0.2 4,040,245 - galE BNILDI_20120 0.31 +0.7 4,040,246 + galE BNILDI_20120 0.32 -0.1 4,040,291 + galE BNILDI_20120 0.36 -0.0 4,040,292 - galE BNILDI_20120 0.36 +0.0 4,040,302 + galE BNILDI_20120 0.37 +0.9 4,040,303 - galE BNILDI_20120 0.37 -0.5 4,040,334 + galE BNILDI_20120 0.40 +0.2 4,040,334 + galE BNILDI_20120 0.40 -0.6 4,040,337 - galE BNILDI_20120 0.40 +0.8 4,040,379 + galE BNILDI_20120 0.45 -0.3 4,040,482 - galE BNILDI_20120 0.55 +0.4 4,040,483 + galE BNILDI_20120 0.55 +0.7 4,040,483 + galE BNILDI_20120 0.55 -0.2 4,040,499 - galE BNILDI_20120 0.56 +0.3 4,040,658 - galE BNILDI_20120 0.72 +0.6 4,040,909 - +0.0 4,041,444 + BNILDI_20125 0.46 -0.3
Or see this region's nucleotide sequence