Strain Fitness in Escherichia coli ECRC62 around BNILDI_16770

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
3,356,546	-	ydhF	BNILDI_16760	0.74	+0.4
3,356,633	+	ydhF	BNILDI_16760	0.84	+0.3
3,356,771	+				-0.1
3,356,777	-				-3.5
3,356,828	+				-0.5
3,356,828	+				+1.1
3,356,829	-				+0.4
3,357,155	+	sodC	BNILDI_16765	0.57	-3.7
3,357,215	+	sodC	BNILDI_16765	0.68	-2.3
3,357,314	+	sodC	BNILDI_16765	0.87	+0.0
3,357,314	+	sodC	BNILDI_16765	0.87	-0.1
3,357,370	+				-3.0
3,357,382	+				-0.1
3,357,382	+				-2.0
3,357,436	+				+0.8
3,357,514	-				-0.4
3,357,587	+	ydhK	BNILDI_16770	0.10	+0.3
3,357,588	-	ydhK	BNILDI_16770	0.10	+0.2
3,357,676	-	ydhK	BNILDI_16770	0.15	-0.0
3,357,746	-	ydhK	BNILDI_16770	0.18	+1.1
3,358,071	+	ydhK	BNILDI_16770	0.34	+0.2
3,358,132	-	ydhK	BNILDI_16770	0.37	+0.2
3,358,141	-	ydhK	BNILDI_16770	0.38	+1.2
3,358,141	-	ydhK	BNILDI_16770	0.38	+1.2
3,358,381	-	ydhK	BNILDI_16770	0.50	-0.5
3,358,402	-	ydhK	BNILDI_16770	0.51	+1.1
3,358,412	+	ydhK	BNILDI_16770	0.51	+1.3
3,358,443	+	ydhK	BNILDI_16770	0.53	-0.6
3,358,443	+	ydhK	BNILDI_16770	0.53	+0.9
3,358,509	-	ydhK	BNILDI_16770	0.56	+1.8
3,358,509	-	ydhK	BNILDI_16770	0.56	+0.3
3,358,613	+	ydhK	BNILDI_16770	0.61	+1.8
3,358,614	-	ydhK	BNILDI_16770	0.61	-0.1
3,358,614	-	ydhK	BNILDI_16770	0.61	+0.2
3,358,614	-	ydhK	BNILDI_16770	0.61	+0.6
3,358,614	-	ydhK	BNILDI_16770	0.61	+0.8
3,358,644	-	ydhK	BNILDI_16770	0.63	+1.0
3,358,647	+	ydhK	BNILDI_16770	0.63	+0.0
3,358,647	+	ydhK	BNILDI_16770	0.63	-0.6
3,358,671	-	ydhK	BNILDI_16770	0.64	+1.2
3,358,671	-	ydhK	BNILDI_16770	0.64	-0.3
3,358,722	-	ydhK	BNILDI_16770	0.67	-0.7
3,358,744	-	ydhK	BNILDI_16770	0.68	+0.1
3,358,866	-	ydhK	BNILDI_16770	0.74	+0.1
3,358,977	-	ydhK	BNILDI_16770	0.79	-1.5
3,358,977	-	ydhK	BNILDI_16770	0.79	+0.4
3,358,980	-	ydhK	BNILDI_16770	0.79	-0.6
3,359,103	+	ydhK	BNILDI_16770	0.86	-0.4
3,359,129	+	ydhK	BNILDI_16770	0.87	-0.0
3,359,129	+	ydhK	BNILDI_16770	0.87	-0.4
3,359,130	-	ydhK	BNILDI_16770	0.87	-0.8
3,359,275	+				-0.4
3,359,312	+				-2.1
3,359,326	+				-0.1
3,359,509	+	ydhJ	BNILDI_16775	0.15	+1.4
3,359,509	+	ydhJ	BNILDI_16775	0.15	-0.3
3,359,613	+	ydhJ	BNILDI_16775	0.29	+0.1
3,359,613	+	ydhJ	BNILDI_16775	0.29	+0.5
3,359,614	-	ydhJ	BNILDI_16775	0.29	-1.3
3,359,614	-	ydhJ	BNILDI_16775	0.29	+0.7
3,359,620	+	ydhJ	BNILDI_16775	0.29	+0.3
3,359,620	+	ydhJ	BNILDI_16775	0.29	-0.9
3,359,621	-	ydhJ	BNILDI_16775	0.30	+0.2
3,359,685	+	ydhJ	BNILDI_16775	0.38	-1.1
3,359,866	+	ydhJ	BNILDI_16775	0.61	+0.2
3,360,023	-	ydhJ	BNILDI_16775	0.82	+1.0
3,360,073	+	ydhJ	BNILDI_16775	0.88	-0.5
3,360,089	-				-0.5
3,360,166	-				-0.0
3,360,250	+				+0.9
3,360,255	-				-1.3
3,360,345	-	ydhI	BNILDI_16780	0.39	-0.1
3,360,370	+	ydhI	BNILDI_16780	0.49	-2.3