Strain Fitness in Escherichia coli ECRC62 around BNILDI_15580

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_15575 and BNILDI_15580 are separated by 18 nucleotidesBNILDI_15580 and BNILDI_15585 are separated by 272 nucleotides BNILDI_15575: BNILDI_15575 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 3,130,811 to 3,131,767 _15575 BNILDI_15580: BNILDI_15580 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 3,131,786 to 3,132,823 _15580 BNILDI_15585: BNILDI_15585 - maltose ABC transporter substrate-binding protein, at 3,133,096 to 3,134,328 _15585 Position (kb) 3131 3132 3133Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3131.009 kb on - strand, within BNILDI_15575at 3131.416 kb on + strand, within BNILDI_15575at 3131.420 kb on + strand, within BNILDI_15575at 3131.445 kb on - strand, within BNILDI_15575at 3131.624 kb on - strand, within BNILDI_15575at 3131.670 kb on - strand, within BNILDI_15575at 3131.974 kb on - strand, within BNILDI_15580at 3132.276 kb on - strand, within BNILDI_15580at 3132.320 kb on - strand, within BNILDI_15580at 3132.408 kb on + strand, within BNILDI_15580at 3133.671 kb on + strand, within BNILDI_15585

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,131,009 - BNILDI_15575 0.21 +0.5
3,131,416 + BNILDI_15575 0.63 -0.2
3,131,420 + BNILDI_15575 0.64 -0.5
3,131,445 - BNILDI_15575 0.66 -0.1
3,131,624 - BNILDI_15575 0.85 -0.3
3,131,670 - BNILDI_15575 0.90 +0.2
3,131,974 - BNILDI_15580 0.18 +1.2
3,132,276 - BNILDI_15580 0.47 +0.1
3,132,320 - BNILDI_15580 0.51 -3.0
3,132,408 + BNILDI_15580 0.60 +2.9
3,133,671 + BNILDI_15585 0.47 -0.7

Or see this region's nucleotide sequence