Strain Fitness in Escherichia coli ECRC62 around BNILDI_12255

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,458,746	+	pdeF	BNILDI_12250	0.60	+0.1
2,458,747	-	pdeF	BNILDI_12250	0.60	+0.6
2,458,747	-	pdeF	BNILDI_12250	0.60	+0.1
2,458,774	-	pdeF	BNILDI_12250	0.61	-0.1
2,458,774	-	pdeF	BNILDI_12250	0.61	+0.1
2,458,797	-	pdeF	BNILDI_12250	0.62	-2.9
2,458,838	+	pdeF	BNILDI_12250	0.64	-0.4
2,458,961	+	pdeF	BNILDI_12250	0.69	+0.5
2,458,977	+	pdeF	BNILDI_12250	0.70	-0.2
2,459,099	+	pdeF	BNILDI_12250	0.75	-0.2
2,459,099	+	pdeF	BNILDI_12250	0.75	-0.3
2,459,099	+	pdeF	BNILDI_12250	0.75	+0.5
2,459,100	-	pdeF	BNILDI_12250	0.75	+0.2
2,459,100	-	pdeF	BNILDI_12250	0.75	-0.5
2,459,100	-	pdeF	BNILDI_12250	0.75	+0.3
2,459,100	-	pdeF	BNILDI_12250	0.75	+0.9
2,459,100	-	pdeF	BNILDI_12250	0.75	-0.2
2,459,153	+	pdeF	BNILDI_12250	0.78	-0.1
2,459,153	+	pdeF	BNILDI_12250	0.78	-2.2
2,459,157	-	pdeF	BNILDI_12250	0.78	-0.2
2,459,220	-	pdeF	BNILDI_12250	0.81	+2.1
2,459,246	+	pdeF	BNILDI_12250	0.82	-0.3
2,459,433	-				-0.3
2,459,462	-				+0.5
2,459,517	+				-1.5
2,459,518	-				-0.2
2,459,518	-				+0.2
2,459,569	-				-1.0
2,459,570	+				+0.5
2,459,570	+				-0.0
2,459,591	+				-1.1
2,459,758	-				-1.6
2,459,804	-				+0.2
2,459,900	+	ppx	BNILDI_12255	0.14	+0.0
2,459,901	-	ppx	BNILDI_12255	0.14	+0.5
2,459,903	+	ppx	BNILDI_12255	0.14	+0.2
2,459,918	+	ppx	BNILDI_12255	0.15	-0.1
2,459,925	-	ppx	BNILDI_12255	0.15	+0.3
2,459,951	-	ppx	BNILDI_12255	0.17	-2.1
2,459,959	+	ppx	BNILDI_12255	0.17	-0.4
2,459,959	+	ppx	BNILDI_12255	0.17	-0.2
2,460,072	+	ppx	BNILDI_12255	0.25	+0.8
2,460,202	-	ppx	BNILDI_12255	0.33	+0.2
2,460,325	-	ppx	BNILDI_12255	0.41	-0.5
2,460,342	-	ppx	BNILDI_12255	0.42	-0.1
2,460,377	+	ppx	BNILDI_12255	0.45	+1.0
2,460,706	-	ppx	BNILDI_12255	0.66	-0.5
2,460,706	-	ppx	BNILDI_12255	0.66	+0.6
2,460,755	-	ppx	BNILDI_12255	0.69	-2.6
2,460,838	+	ppx	BNILDI_12255	0.74	-0.8
2,460,838	+	ppx	BNILDI_12255	0.74	+2.7
2,460,974	+	ppx	BNILDI_12255	0.83	+0.2
2,460,975	-	ppx	BNILDI_12255	0.83	+2.4
2,461,066	+	ppx	BNILDI_12255	0.89	-0.0
2,461,066	+	ppx	BNILDI_12255	0.89	+1.8
2,461,066	+	ppx	BNILDI_12255	0.89	-0.0
2,461,069	+	ppx	BNILDI_12255	0.89	+0.7
2,461,069	+	ppx	BNILDI_12255	0.89	+0.2
2,461,140	-				-1.7
2,461,152	-				-2.8
2,461,152	-				+0.1
2,461,216	+				-0.4
2,461,265	-				-0.3
2,461,270	+				-0.2
2,461,270	+				-0.7
2,461,271	-				-0.1
2,461,271	-				+0.7
2,461,374	+				+0.3
2,461,375	-				-0.2
2,461,375	-				-2.4
2,461,375	-				-0.5
2,461,538	-	ppk1	BNILDI_12260	0.15	-0.8
2,461,550	+	ppk1	BNILDI_12260	0.15	-1.0
2,461,655	-	ppk1	BNILDI_12260	0.20	-0.1
2,461,688	+	ppk1	BNILDI_12260	0.22	-0.5
2,461,689	-	ppk1	BNILDI_12260	0.22	-0.1
2,461,693	-	ppk1	BNILDI_12260	0.22	-1.1
2,461,693	-	ppk1	BNILDI_12260	0.22	-0.3
2,461,749	+	ppk1	BNILDI_12260	0.25	-1.1
2,461,750	-	ppk1	BNILDI_12260	0.25	-0.3
2,461,760	-	ppk1	BNILDI_12260	0.25	+0.2
2,461,794	+	ppk1	BNILDI_12260	0.27	-1.2
2,461,795	-	ppk1	BNILDI_12260	0.27	+1.5
2,461,838	+	ppk1	BNILDI_12260	0.29	+0.9
2,462,027	+	ppk1	BNILDI_12260	0.38	+0.1
2,462,028	-	ppk1	BNILDI_12260	0.38	+0.3
2,462,073	-	ppk1	BNILDI_12260	0.40	-1.8
2,462,124	-	ppk1	BNILDI_12260	0.43	-0.7
2,462,130	-	ppk1	BNILDI_12260	0.43	-0.2