Strain Fitness in Escherichia coli ECRC62 around BNILDI_12040

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,413,341	-	hcaD	BNILDI_12030	0.85	-1.3
2,413,393	-	hcaD	BNILDI_12030	0.90	-0.2
2,413,393	-	hcaD	BNILDI_12030	0.90	-0.5
2,413,495	+				+0.6
2,413,527	+				-0.8
2,413,641	+	hcaB	BNILDI_12035	0.14	+0.7
2,413,642	-	hcaB	BNILDI_12035	0.14	+0.0
2,413,777	+	hcaB	BNILDI_12035	0.31	-0.2
2,413,777	+	hcaB	BNILDI_12035	0.31	+0.7
2,413,988	+	hcaB	BNILDI_12035	0.57	+0.8
2,414,042	-	hcaB	BNILDI_12035	0.63	+0.4
2,414,042	-	hcaB	BNILDI_12035	0.63	-0.3
2,414,161	+	hcaB	BNILDI_12035	0.78	-1.6
2,414,179	+	hcaB	BNILDI_12035	0.80	-0.1
2,414,353	+				-0.0
2,414,394	-	hcaC	BNILDI_12040	0.18	+0.2
2,414,498	+	hcaC	BNILDI_12040	0.51	-0.9
2,414,549	+	hcaC	BNILDI_12040	0.67	-0.0
2,414,642	+				+1.3
2,414,642	+				+0.6
2,414,664	+				-1.0
2,414,664	+				+0.3
2,414,665	-				+0.1
2,414,665	-				+0.2
2,414,776	+	hcaF	BNILDI_12045	0.23	+0.3
2,414,776	+	hcaF	BNILDI_12045	0.23	-0.0
2,414,777	-	hcaF	BNILDI_12045	0.24	+1.2
2,414,777	-	hcaF	BNILDI_12045	0.24	-0.1
2,414,777	-	hcaF	BNILDI_12045	0.24	-0.0
2,414,777	-	hcaF	BNILDI_12045	0.24	+0.2
2,414,818	+	hcaF	BNILDI_12045	0.31	-0.4
2,414,838	+	hcaF	BNILDI_12045	0.35	-0.0
2,414,839	-	hcaF	BNILDI_12045	0.35	+0.2
2,414,880	+	hcaF	BNILDI_12045	0.43	+0.0
2,415,030	-	hcaF	BNILDI_12045	0.72	+1.1
2,415,050	-	hcaF	BNILDI_12045	0.76	+0.4
2,415,105	+	hcaF	BNILDI_12045	0.87	-0.2
2,415,106	-	hcaF	BNILDI_12045	0.87	+1.0
2,415,147	+				-0.4
2,415,147	+				-0.4
2,415,147	+				+0.6
2,415,147	+				+1.0
2,415,147	+				+0.0
2,415,148	-				+1.1
2,415,148	-				+0.1
2,415,290	-				-1.9
2,415,291	+				+2.8
2,415,292	-				+0.0
2,415,292	-				-0.1
2,415,295	+				+0.5
2,415,295	+				-1.8
2,415,295	+				-0.8
2,415,296	-				+0.0
2,415,296	-				-0.3
2,415,296	-				-0.0
2,415,296	-				-0.1
2,415,299	-				+0.3
2,415,613	+	hcaE	BNILDI_12050	0.33	-0.2
2,415,647	+	hcaE	BNILDI_12050	0.35	+0.1