Strain Fitness in Escherichia coli ECRC62 around BNILDI_05780

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,144,487	+				-0.7
1,144,487	+				+0.4
1,144,547	+	yijO	BNILDI_05775	0.12	+0.3
1,144,548	-	yijO	BNILDI_05775	0.12	-0.0
1,144,548	-	yijO	BNILDI_05775	0.12	+0.9
1,144,649	+	yijO	BNILDI_05775	0.24	-0.3
1,144,697	+	yijO	BNILDI_05775	0.29	-0.2
1,144,698	-	yijO	BNILDI_05775	0.29	+0.2
1,144,698	-	yijO	BNILDI_05775	0.29	-0.6
1,144,710	+	yijO	BNILDI_05775	0.31	+0.5
1,144,711	-	yijO	BNILDI_05775	0.31	+0.5
1,144,712	+	yijO	BNILDI_05775	0.31	-0.2
1,144,712	+	yijO	BNILDI_05775	0.31	+0.6
1,144,713	-	yijO	BNILDI_05775	0.31	+0.5
1,144,754	+	yijO	BNILDI_05775	0.36	+0.8
1,144,754	+	yijO	BNILDI_05775	0.36	-0.2
1,144,754	+	yijO	BNILDI_05775	0.36	+0.6
1,144,754	+	yijO	BNILDI_05775	0.36	+0.3
1,144,789	+	yijO	BNILDI_05775	0.40	+0.1
1,144,790	-	yijO	BNILDI_05775	0.40	-0.8
1,144,866	+	yijO	BNILDI_05775	0.49	-0.2
1,144,922	-	yijO	BNILDI_05775	0.56	+0.5
1,144,922	-	yijO	BNILDI_05775	0.56	-0.1
1,144,922	-	yijO	BNILDI_05775	0.56	+0.2
1,144,937	-	yijO	BNILDI_05775	0.58	-0.0
1,144,937	-	yijO	BNILDI_05775	0.58	-0.2
1,144,938	+	yijO	BNILDI_05775	0.58	+0.2
1,144,938	+	yijO	BNILDI_05775	0.58	+0.6
1,144,939	-	yijO	BNILDI_05775	0.58	+0.8
1,145,052	+	yijO	BNILDI_05775	0.71	-0.1
1,145,099	+	yijO	BNILDI_05775	0.77	+0.5
1,145,099	+	yijO	BNILDI_05775	0.77	+0.1
1,145,099	+	yijO	BNILDI_05775	0.77	-0.2
1,145,100	-	yijO	BNILDI_05775	0.77	+0.0
1,145,119	+	yijO	BNILDI_05775	0.79	-2.3
1,145,232	-				+0.0
1,145,279	+				-1.6
1,145,280	-				+1.8
1,145,294	+				+0.2
1,145,294	+				+0.0
1,145,295	-				+1.1
1,145,295	-				-0.5
1,145,302	-				-0.8
1,145,302	-				+0.0
1,145,313	+				+0.8
1,145,313	+				-0.2
1,145,314	-				+0.0
1,145,314	-				+0.7
1,145,314	-				+1.4
1,145,314	-				+0.2
1,145,317	+				+0.1
1,145,317	+				-0.1
1,145,318	-				+0.4
1,145,345	+				+0.1
1,145,389	+				+0.8
1,145,390	-				+0.2
1,145,448	+				-0.8
1,145,449	-				-0.9
1,145,518	+				-0.1
1,145,587	-				-0.2
1,145,638	-	ibeC	BNILDI_05780	0.11	-0.0
1,145,641	+	ibeC	BNILDI_05780	0.11	-0.0
1,145,722	-	ibeC	BNILDI_05780	0.16	+0.0
1,145,878	-	ibeC	BNILDI_05780	0.25	-0.8
1,145,902	+	ibeC	BNILDI_05780	0.26	+0.3
1,145,902	+	ibeC	BNILDI_05780	0.26	+0.4
1,145,903	-	ibeC	BNILDI_05780	0.26	+0.0
1,145,904	+	ibeC	BNILDI_05780	0.26	+0.0
1,145,927	+	ibeC	BNILDI_05780	0.28	+0.3
1,145,989	-	ibeC	BNILDI_05780	0.31	+0.4
1,145,994	+	ibeC	BNILDI_05780	0.32	-0.0
1,145,994	+	ibeC	BNILDI_05780	0.32	+0.9
1,146,109	+	ibeC	BNILDI_05780	0.38	+1.8
1,146,124	+	ibeC	BNILDI_05780	0.39	-0.4
1,146,125	-	ibeC	BNILDI_05780	0.39	-0.0
1,146,125	-	ibeC	BNILDI_05780	0.39	+1.2
1,146,125	-	ibeC	BNILDI_05780	0.39	-0.2
1,146,126	+	ibeC	BNILDI_05780	0.39	+0.4
1,146,126	+	ibeC	BNILDI_05780	0.39	-2.3
1,146,126	+	ibeC	BNILDI_05780	0.39	+0.6
1,146,126	+	ibeC	BNILDI_05780	0.39	-0.1
1,146,126	+	ibeC	BNILDI_05780	0.39	+0.5
1,146,126	+	ibeC	BNILDI_05780	0.39	+0.4
1,146,127	-	ibeC	BNILDI_05780	0.39	-0.5
1,146,127	-	ibeC	BNILDI_05780	0.39	+1.0
1,146,127	-	ibeC	BNILDI_05780	0.39	+0.3
1,146,127	-	ibeC	BNILDI_05780	0.39	-0.0
1,146,170	-	ibeC	BNILDI_05780	0.42	+0.4
1,146,214	+	ibeC	BNILDI_05780	0.44	+0.2
1,146,215	-	ibeC	BNILDI_05780	0.44	-0.3
1,146,261	+	ibeC	BNILDI_05780	0.47	-0.0
1,146,261	+	ibeC	BNILDI_05780	0.47	-0.5
1,146,261	+	ibeC	BNILDI_05780	0.47	+0.6
1,146,335	-	ibeC	BNILDI_05780	0.51	+0.6
1,146,373	+	ibeC	BNILDI_05780	0.53	+1.1
1,146,417	+	ibeC	BNILDI_05780	0.56	-1.9
1,146,537	-	ibeC	BNILDI_05780	0.63	+0.3
1,146,555	-	ibeC	BNILDI_05780	0.64	-0.3
1,146,573	+	ibeC	BNILDI_05780	0.65	-0.0
1,146,576	+	ibeC	BNILDI_05780	0.65	+0.8
1,146,667	+	ibeC	BNILDI_05780	0.70	+0.0
1,146,668	-	ibeC	BNILDI_05780	0.70	-0.8
1,146,668	-	ibeC	BNILDI_05780	0.70	+0.3
1,146,668	-	ibeC	BNILDI_05780	0.70	-1.3
1,146,668	-	ibeC	BNILDI_05780	0.70	-0.1
1,146,699	+	ibeC	BNILDI_05780	0.72	+0.6
1,146,699	+	ibeC	BNILDI_05780	0.72	-0.8
1,146,700	-	ibeC	BNILDI_05780	0.72	-0.4
1,146,721	+	ibeC	BNILDI_05780	0.73	+0.0
1,146,721	+	ibeC	BNILDI_05780	0.73	-0.5
1,146,722	-	ibeC	BNILDI_05780	0.74	+0.2
1,146,723	+	ibeC	BNILDI_05780	0.74	-0.8
1,146,723	+	ibeC	BNILDI_05780	0.74	+0.2
1,146,742	+	ibeC	BNILDI_05780	0.75	-0.1
1,146,743	-	ibeC	BNILDI_05780	0.75	-0.2
1,146,744	+	ibeC	BNILDI_05780	0.75	-0.3
1,146,745	-	ibeC	BNILDI_05780	0.75	-0.3
1,146,745	-	ibeC	BNILDI_05780	0.75	-1.1
1,146,789	+	ibeC	BNILDI_05780	0.77	+0.9
1,146,833	+	ibeC	BNILDI_05780	0.80	-0.3
1,146,833	+	ibeC	BNILDI_05780	0.80	-0.0
1,146,834	-	ibeC	BNILDI_05780	0.80	+1.0
1,146,915	+	ibeC	BNILDI_05780	0.85	-0.9
1,146,915	+	ibeC	BNILDI_05780	0.85	-0.0
1,146,916	-	ibeC	BNILDI_05780	0.85	-0.2
1,146,916	-	ibeC	BNILDI_05780	0.85	-0.3
1,146,948	-	ibeC	BNILDI_05780	0.87	+1.3
1,146,973	+	ibeC	BNILDI_05780	0.88	-0.2
1,146,979	+	ibeC	BNILDI_05780	0.88	-3.0
1,146,980	-	ibeC	BNILDI_05780	0.88	-0.0
1,147,060	+				-0.7
1,147,061	-				-0.2
1,147,062	+				+0.7
1,147,075	-				+0.4
1,147,075	-				+1.8
1,147,088	+				+0.2
1,147,113	+				+0.8
1,147,180	+				+0.1
1,147,180	+				+1.8
1,147,181	-				+1.2
1,147,181	-				+0.4
1,147,181	-				+1.2
1,147,183	+				-0.2
1,147,183	+				-0.7
1,147,183	+				-0.5
1,147,184	-				-2.1
1,147,184	-				+1.3
1,147,237	+				-0.4
1,147,238	-				-1.3
1,147,281	+				+0.1
1,147,282	-				+0.2
1,147,301	+				-0.5
1,147,312	+				+0.6
1,147,313	-				+0.8
1,147,380	+				-0.1
1,147,401	+				-0.0
1,147,512	-				+0.9
1,147,561	+				+0.0
1,147,561	+				+0.8
1,147,561	+				+0.0
1,147,562	-				+1.5
1,147,562	-				-1.7
1,147,562	-				+0.3
1,147,622	-				-1.0
1,147,670	+	ppc	BNILDI_05785	0.12	-0.2
1,147,671	-	ppc	BNILDI_05785	0.12	-0.9
1,147,671	-	ppc	BNILDI_05785	0.12	+1.5
1,147,673	+	ppc	BNILDI_05785	0.12	-0.0
1,147,674	-	ppc	BNILDI_05785	0.12	+0.7
1,147,674	-	ppc	BNILDI_05785	0.12	-0.5
1,147,810	-	ppc	BNILDI_05785	0.17	+0.9
1,147,973	+	ppc	BNILDI_05785	0.23	-1.8
1,147,974	-	ppc	BNILDI_05785	0.23	+0.6
1,147,974	-	ppc	BNILDI_05785	0.23	+2.6
1,148,012	+	ppc	BNILDI_05785	0.24	-0.3
1,148,114	+	ppc	BNILDI_05785	0.28	-0.7
1,148,114	+	ppc	BNILDI_05785	0.28	+0.5
1,148,153	+	ppc	BNILDI_05785	0.30	+0.8
1,148,153	+	ppc	BNILDI_05785	0.30	+0.5
1,148,154	-	ppc	BNILDI_05785	0.30	+0.5