Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_05020 and rarD are separated by 46 nucleotides rarD and yigI are separated by 51 nucleotides yigI and pldA are separated by 164 nucleotides
BNILDI_05020: BNILDI_05020 - Membrane protein, at 995,078 to 995,377
_05020
BNILDI_05025: rarD - EamA family transporter RarD, at 995,424 to 996,311
rarD
BNILDI_05030: yigI - thioesterase family protein, at 996,363 to 996,830
yigI
BNILDI_05035: pldA - phospholipase A, at 996,995 to 997,864
pldA
Position (kb) 995
996
997 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 994.429 kb on + strand at 994.453 kb on - strand at 994.454 kb on + strand at 994.477 kb on - strand at 994.967 kb on + strand at 995.076 kb on - strand at 995.220 kb on + strand, within BNILDI_05020 at 995.228 kb on - strand, within BNILDI_05020 at 995.230 kb on - strand, within BNILDI_05020 at 995.230 kb on - strand, within BNILDI_05020 at 995.236 kb on - strand, within BNILDI_05020 at 995.274 kb on - strand, within BNILDI_05020 at 995.276 kb on - strand, within BNILDI_05020 at 995.297 kb on - strand, within BNILDI_05020 at 995.531 kb on - strand, within rarD at 995.531 kb on - strand, within rarD at 995.773 kb on - strand, within rarD at 995.855 kb on + strand, within rarD at 995.990 kb on + strand, within rarD at 995.990 kb on + strand, within rarD at 995.990 kb on + strand, within rarD at 995.995 kb on + strand, within rarD at 996.018 kb on - strand, within rarD at 996.128 kb on - strand, within rarD at 996.217 kb on + strand, within rarD at 996.218 kb on - strand, within rarD at 996.221 kb on - strand, within rarD at 996.235 kb on + strand at 996.258 kb on - strand at 996.279 kb on + strand at 996.280 kb on - strand at 996.283 kb on - strand at 996.356 kb on + strand at 996.369 kb on + strand at 996.369 kb on + strand at 996.376 kb on + strand at 996.401 kb on - strand at 996.401 kb on - strand at 996.401 kb on - strand at 996.479 kb on + strand, within yigI at 996.508 kb on + strand, within yigI at 996.509 kb on - strand, within yigI at 996.556 kb on - strand, within yigI at 996.593 kb on + strand, within yigI at 996.594 kb on - strand, within yigI at 996.728 kb on - strand, within yigI at 996.773 kb on - strand, within yigI at 996.830 kb on + strand at 996.831 kb on - strand at 996.831 kb on - strand at 996.839 kb on + strand at 996.840 kb on - strand at 996.899 kb on - strand at 996.913 kb on - strand at 996.928 kb on - strand at 996.928 kb on - strand at 996.928 kb on - strand at 996.931 kb on + strand at 996.931 kb on + strand at 996.931 kb on + strand at 996.932 kb on - strand at 996.932 kb on - strand at 996.932 kb on - strand at 996.932 kb on - strand at 996.935 kb on + strand at 996.936 kb on - strand at 996.941 kb on - strand at 996.970 kb on + strand at 996.970 kb on + strand at 996.971 kb on - strand at 996.971 kb on - strand at 997.030 kb on + strand at 997.031 kb on - strand at 997.039 kb on + strand at 997.047 kb on + strand at 997.047 kb on + strand at 997.047 kb on + strand at 997.048 kb on - strand at 997.048 kb on - strand at 997.048 kb on - strand at 997.048 kb on - strand at 997.049 kb on + strand at 997.049 kb on + strand at 997.049 kb on + strand at 997.049 kb on + strand at 997.049 kb on + strand at 997.049 kb on + strand at 997.050 kb on - strand at 997.050 kb on - strand at 997.050 kb on - strand at 997.106 kb on - strand, within pldA at 997.118 kb on - strand, within pldA at 997.157 kb on + strand, within pldA at 997.170 kb on - strand, within pldA at 997.179 kb on - strand, within pldA at 997.179 kb on - strand, within pldA at 997.179 kb on - strand, within pldA at 997.179 kb on - strand, within pldA at 997.179 kb on - strand, within pldA at 997.220 kb on + strand, within pldA at 997.255 kb on - strand, within pldA at 997.255 kb on - strand, within pldA
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 994,429 + -0.4 994,453 - +0.3 994,454 + +1.2 994,477 - +0.7 994,967 + -0.5 995,076 - -3.2 995,220 + BNILDI_05020 0.47 +0.6 995,228 - BNILDI_05020 0.50 +0.9 995,230 - BNILDI_05020 0.51 +0.5 995,230 - BNILDI_05020 0.51 +1.4 995,236 - BNILDI_05020 0.53 +0.2 995,274 - BNILDI_05020 0.65 -0.4 995,276 - BNILDI_05020 0.66 -0.5 995,297 - BNILDI_05020 0.73 +0.4 995,531 - rarD BNILDI_05025 0.12 +0.6 995,531 - rarD BNILDI_05025 0.12 -0.4 995,773 - rarD BNILDI_05025 0.39 +0.2 995,855 + rarD BNILDI_05025 0.49 +0.3 995,990 + rarD BNILDI_05025 0.64 -0.1 995,990 + rarD BNILDI_05025 0.64 +0.1 995,990 + rarD BNILDI_05025 0.64 +0.4 995,995 + rarD BNILDI_05025 0.64 -0.7 996,018 - rarD BNILDI_05025 0.67 -0.1 996,128 - rarD BNILDI_05025 0.79 -0.4 996,217 + rarD BNILDI_05025 0.89 +0.8 996,218 - rarD BNILDI_05025 0.89 -1.0 996,221 - rarD BNILDI_05025 0.90 -1.0 996,235 + +0.2 996,258 - -0.5 996,279 + +0.1 996,280 - +0.4 996,283 - +0.8 996,356 + +0.2 996,369 + -0.3 996,369 + -0.1 996,376 + +0.2 996,401 - -0.8 996,401 - +0.2 996,401 - +1.5 996,479 + yigI BNILDI_05030 0.25 -0.8 996,508 + yigI BNILDI_05030 0.31 +0.1 996,509 - yigI BNILDI_05030 0.31 +3.8 996,556 - yigI BNILDI_05030 0.41 -2.0 996,593 + yigI BNILDI_05030 0.49 -0.4 996,594 - yigI BNILDI_05030 0.49 +0.2 996,728 - yigI BNILDI_05030 0.78 -0.2 996,773 - yigI BNILDI_05030 0.88 -0.7 996,830 + +1.5 996,831 - +0.3 996,831 - +0.3 996,839 + -0.0 996,840 - +0.5 996,899 - +0.0 996,913 - -1.7 996,928 - -0.2 996,928 - -1.7 996,928 - -1.3 996,931 + -0.1 996,931 + -0.2 996,931 + +0.2 996,932 - -0.2 996,932 - -1.5 996,932 - +0.3 996,932 - +0.3 996,935 + +0.4 996,936 - +1.0 996,941 - +0.3 996,970 + +0.7 996,970 + +0.2 996,971 - -0.2 996,971 - +0.7 997,030 + -0.5 997,031 - +0.7 997,039 + -1.2 997,047 + -0.5 997,047 + +0.4 997,047 + +0.2 997,048 - -0.8 997,048 - -0.6 997,048 - +0.4 997,048 - +0.3 997,049 + +0.0 997,049 + +0.2 997,049 + +1.3 997,049 + -0.5 997,049 + +1.7 997,049 + +0.1 997,050 - -2.2 997,050 - -0.3 997,050 - +0.1 997,106 - pldA BNILDI_05035 0.13 -0.6 997,118 - pldA BNILDI_05035 0.14 -0.4 997,157 + pldA BNILDI_05035 0.19 -0.8 997,170 - pldA BNILDI_05035 0.20 -0.2 997,179 - pldA BNILDI_05035 0.21 -0.5 997,179 - pldA BNILDI_05035 0.21 +0.3 997,179 - pldA BNILDI_05035 0.21 -3.0 997,179 - pldA BNILDI_05035 0.21 +0.8 997,179 - pldA BNILDI_05035 0.21 +0.7 997,220 + pldA BNILDI_05035 0.26 -0.5 997,255 - pldA BNILDI_05035 0.30 -0.8 997,255 - pldA BNILDI_05035 0.30 +1.8
Or see this region's nucleotide sequence