Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rsmG and mnmG are separated by 39 nucleotides mnmG and mioC are separated by 378 nucleotides mioC and asnC are separated by 89 nucleotides
BNILDI_04600: rsmG - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 910,035 to 910,682
rsmG
BNILDI_04605: mnmG - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 910,722 to 912,611
mnmG
BNILDI_04610: mioC - FMN-binding protein MioC, at 912,990 to 913,433
mioC
BNILDI_04615: asnC - transcriptional regulator AsnC, at 913,523 to 913,981
asnC
Position (kb) 910
911
912
913 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 909.739 kb on + strand at 909.889 kb on - strand at 909.918 kb on - strand at 909.964 kb on + strand at 909.964 kb on + strand at 909.965 kb on - strand at 909.965 kb on - strand at 909.965 kb on - strand at 909.965 kb on - strand at 909.966 kb on + strand at 909.966 kb on + strand at 910.252 kb on - strand, within rsmG at 910.252 kb on - strand, within rsmG at 910.252 kb on - strand, within rsmG at 910.287 kb on + strand, within rsmG at 910.311 kb on - strand, within rsmG at 910.323 kb on - strand, within rsmG at 910.406 kb on + strand, within rsmG at 910.451 kb on + strand, within rsmG at 910.472 kb on - strand, within rsmG at 910.499 kb on + strand, within rsmG at 910.521 kb on - strand, within rsmG at 910.521 kb on - strand, within rsmG at 910.521 kb on - strand, within rsmG at 910.562 kb on + strand, within rsmG at 910.562 kb on + strand, within rsmG at 910.563 kb on - strand, within rsmG at 910.563 kb on - strand, within rsmG at 910.563 kb on - strand, within rsmG at 910.572 kb on - strand, within rsmG at 910.572 kb on - strand, within rsmG at 910.572 kb on - strand, within rsmG at 910.579 kb on + strand, within rsmG at 910.586 kb on + strand, within rsmG at 910.586 kb on + strand, within rsmG at 910.619 kb on + strand at 910.619 kb on + strand at 910.638 kb on + strand at 910.743 kb on - strand at 910.743 kb on - strand at 910.842 kb on - strand at 910.961 kb on - strand, within mnmG at 910.961 kb on - strand, within mnmG at 910.969 kb on + strand, within mnmG at 910.970 kb on - strand, within mnmG at 911.352 kb on + strand, within mnmG at 911.786 kb on - strand, within mnmG at 911.819 kb on - strand, within mnmG at 911.874 kb on - strand, within mnmG at 911.874 kb on - strand, within mnmG at 912.103 kb on + strand, within mnmG at 912.228 kb on - strand, within mnmG at 912.228 kb on - strand, within mnmG at 912.285 kb on - strand, within mnmG at 912.670 kb on - strand at 912.698 kb on + strand at 912.699 kb on - strand at 912.699 kb on - strand at 912.714 kb on - strand at 912.727 kb on - strand at 912.987 kb on + strand at 912.991 kb on + strand at 912.991 kb on + strand at 913.124 kb on + strand, within mioC at 913.150 kb on + strand, within mioC at 913.150 kb on + strand, within mioC at 913.225 kb on + strand, within mioC at 913.226 kb on - strand, within mioC at 913.226 kb on - strand, within mioC at 913.226 kb on - strand, within mioC at 913.250 kb on + strand, within mioC at 913.302 kb on + strand, within mioC at 913.302 kb on + strand, within mioC at 913.340 kb on + strand, within mioC at 913.341 kb on - strand, within mioC at 913.385 kb on - strand, within mioC at 913.415 kb on + strand at 913.415 kb on + strand at 913.416 kb on - strand at 913.425 kb on - strand at 913.447 kb on + strand at 913.451 kb on - strand at 913.466 kb on + strand at 913.467 kb on - strand at 913.504 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 909,739 + -0.8 909,889 - +0.3 909,918 - +0.5 909,964 + -0.2 909,964 + +0.6 909,965 - +0.8 909,965 - +1.5 909,965 - +0.6 909,965 - +0.0 909,966 + -0.4 909,966 + -0.1 910,252 - rsmG BNILDI_04600 0.33 +0.1 910,252 - rsmG BNILDI_04600 0.33 +0.6 910,252 - rsmG BNILDI_04600 0.33 +0.3 910,287 + rsmG BNILDI_04600 0.39 +0.2 910,311 - rsmG BNILDI_04600 0.43 -0.1 910,323 - rsmG BNILDI_04600 0.44 -0.5 910,406 + rsmG BNILDI_04600 0.57 +0.3 910,451 + rsmG BNILDI_04600 0.64 +0.5 910,472 - rsmG BNILDI_04600 0.67 +0.8 910,499 + rsmG BNILDI_04600 0.72 -1.7 910,521 - rsmG BNILDI_04600 0.75 -1.9 910,521 - rsmG BNILDI_04600 0.75 -1.4 910,521 - rsmG BNILDI_04600 0.75 +0.7 910,562 + rsmG BNILDI_04600 0.81 +0.3 910,562 + rsmG BNILDI_04600 0.81 +0.3 910,563 - rsmG BNILDI_04600 0.81 -0.2 910,563 - rsmG BNILDI_04600 0.81 +0.0 910,563 - rsmG BNILDI_04600 0.81 -1.9 910,572 - rsmG BNILDI_04600 0.83 +3.1 910,572 - rsmG BNILDI_04600 0.83 +1.5 910,572 - rsmG BNILDI_04600 0.83 +0.0 910,579 + rsmG BNILDI_04600 0.84 -0.7 910,586 + rsmG BNILDI_04600 0.85 +0.3 910,586 + rsmG BNILDI_04600 0.85 -0.6 910,619 + +1.6 910,619 + -0.1 910,638 + -1.1 910,743 - -0.1 910,743 - +0.4 910,842 - -0.3 910,961 - mnmG BNILDI_04605 0.13 -0.7 910,961 - mnmG BNILDI_04605 0.13 -0.2 910,969 + mnmG BNILDI_04605 0.13 +1.3 910,970 - mnmG BNILDI_04605 0.13 +0.6 911,352 + mnmG BNILDI_04605 0.33 +0.3 911,786 - mnmG BNILDI_04605 0.56 -2.3 911,819 - mnmG BNILDI_04605 0.58 +0.3 911,874 - mnmG BNILDI_04605 0.61 +1.9 911,874 - mnmG BNILDI_04605 0.61 +2.9 912,103 + mnmG BNILDI_04605 0.73 +0.6 912,228 - mnmG BNILDI_04605 0.80 -0.7 912,228 - mnmG BNILDI_04605 0.80 +1.0 912,285 - mnmG BNILDI_04605 0.83 +1.1 912,670 - +0.7 912,698 + +0.5 912,699 - -0.3 912,699 - +1.4 912,714 - +2.4 912,727 - -0.5 912,987 + -0.8 912,991 + +1.1 912,991 + +0.2 913,124 + mioC BNILDI_04610 0.30 -2.0 913,150 + mioC BNILDI_04610 0.36 +1.2 913,150 + mioC BNILDI_04610 0.36 -0.3 913,225 + mioC BNILDI_04610 0.53 +0.8 913,226 - mioC BNILDI_04610 0.53 -0.6 913,226 - mioC BNILDI_04610 0.53 +0.4 913,226 - mioC BNILDI_04610 0.53 -0.4 913,250 + mioC BNILDI_04610 0.59 +0.1 913,302 + mioC BNILDI_04610 0.70 -0.7 913,302 + mioC BNILDI_04610 0.70 -0.3 913,340 + mioC BNILDI_04610 0.79 -0.5 913,341 - mioC BNILDI_04610 0.79 -1.3 913,385 - mioC BNILDI_04610 0.89 +0.2 913,415 + +1.1 913,415 + -2.0 913,416 - -1.4 913,425 - +0.4 913,447 + -0.8 913,451 - -0.3 913,466 + -0.5 913,467 - -0.3 913,504 - +1.9
Or see this region's nucleotide sequence