Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dgoD and dgoA overlap by 4 nucleotides dgoA and dgoK overlap by 17 nucleotides dgoK and dgoR overlap by 4 nucleotides dgoR and yidX are separated by 277 nucleotides
BNILDI_04320: dgoD - galactonate dehydratase, at 854,328 to 855,476
dgoD
BNILDI_04325: dgoA - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 855,473 to 856,090
dgoA
BNILDI_04330: dgoK - 2-dehydro-3-deoxygalactonokinase, at 856,074 to 856,952
dgoK
BNILDI_04335: dgoR - D-galactonate utilization transcriptional regulator DgoR, at 856,949 to 857,638
dgoR
BNILDI_04340: yidX - Uncharacterized protein YidX, at 857,916 to 858,572
yidX
Position (kb) 856
857 Strain fitness (log2 ratio) -2
-1
0
1 at 855.080 kb on + strand, within dgoD at 855.080 kb on + strand, within dgoD at 855.127 kb on + strand, within dgoD at 855.128 kb on - strand, within dgoD at 855.135 kb on - strand, within dgoD at 855.325 kb on + strand, within dgoD at 855.451 kb on + strand at 855.553 kb on - strand, within dgoA at 855.567 kb on - strand, within dgoA at 855.567 kb on - strand, within dgoA at 855.710 kb on + strand, within dgoA at 855.835 kb on + strand, within dgoA at 855.890 kb on + strand, within dgoA at 855.896 kb on - strand, within dgoA at 855.896 kb on - strand, within dgoA at 856.075 kb on + strand at 856.076 kb on - strand at 856.104 kb on + strand at 856.106 kb on + strand at 856.107 kb on - strand at 856.107 kb on - strand at 856.107 kb on - strand at 856.177 kb on + strand, within dgoK at 856.234 kb on + strand, within dgoK at 856.354 kb on - strand, within dgoK at 856.455 kb on + strand, within dgoK at 856.550 kb on - strand, within dgoK at 856.550 kb on - strand, within dgoK at 856.550 kb on - strand, within dgoK at 856.550 kb on - strand, within dgoK at 856.550 kb on - strand, within dgoK at 856.550 kb on - strand, within dgoK at 856.638 kb on + strand, within dgoK at 856.659 kb on - strand, within dgoK at 856.717 kb on - strand, within dgoK at 856.717 kb on - strand, within dgoK at 856.779 kb on - strand, within dgoK at 856.812 kb on + strand, within dgoK at 856.812 kb on + strand, within dgoK at 856.940 kb on - strand at 857.054 kb on - strand, within dgoR at 857.201 kb on - strand, within dgoR at 857.396 kb on + strand, within dgoR at 857.397 kb on - strand, within dgoR at 857.412 kb on + strand, within dgoR at 857.413 kb on - strand, within dgoR at 857.574 kb on + strand at 857.575 kb on - strand at 857.575 kb on - strand at 857.606 kb on - strand at 857.658 kb on + strand at 857.658 kb on + strand at 857.670 kb on + strand at 857.670 kb on + strand at 857.671 kb on - strand at 857.671 kb on - strand at 857.671 kb on - strand at 857.692 kb on - strand at 857.875 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 855,080 + dgoD BNILDI_04320 0.65 -0.2 855,080 + dgoD BNILDI_04320 0.65 +0.5 855,127 + dgoD BNILDI_04320 0.70 -0.5 855,128 - dgoD BNILDI_04320 0.70 -1.6 855,135 - dgoD BNILDI_04320 0.70 -0.1 855,325 + dgoD BNILDI_04320 0.87 +0.2 855,451 + -0.3 855,553 - dgoA BNILDI_04325 0.13 -0.0 855,567 - dgoA BNILDI_04325 0.15 -1.5 855,567 - dgoA BNILDI_04325 0.15 +0.1 855,710 + dgoA BNILDI_04325 0.38 -0.2 855,835 + dgoA BNILDI_04325 0.59 +0.1 855,890 + dgoA BNILDI_04325 0.67 +0.6 855,896 - dgoA BNILDI_04325 0.68 +0.1 855,896 - dgoA BNILDI_04325 0.68 +1.3 856,075 + -0.1 856,076 - -0.4 856,104 + -0.9 856,106 + -1.8 856,107 - -0.7 856,107 - -0.7 856,107 - +0.7 856,177 + dgoK BNILDI_04330 0.12 -0.8 856,234 + dgoK BNILDI_04330 0.18 +1.0 856,354 - dgoK BNILDI_04330 0.32 -1.1 856,455 + dgoK BNILDI_04330 0.43 -0.0 856,550 - dgoK BNILDI_04330 0.54 -0.1 856,550 - dgoK BNILDI_04330 0.54 +1.2 856,550 - dgoK BNILDI_04330 0.54 +0.1 856,550 - dgoK BNILDI_04330 0.54 +1.4 856,550 - dgoK BNILDI_04330 0.54 -2.1 856,550 - dgoK BNILDI_04330 0.54 +1.2 856,638 + dgoK BNILDI_04330 0.64 +0.8 856,659 - dgoK BNILDI_04330 0.67 +0.3 856,717 - dgoK BNILDI_04330 0.73 -1.2 856,717 - dgoK BNILDI_04330 0.73 -1.3 856,779 - dgoK BNILDI_04330 0.80 +0.3 856,812 + dgoK BNILDI_04330 0.84 -0.3 856,812 + dgoK BNILDI_04330 0.84 +0.3 856,940 - -0.2 857,054 - dgoR BNILDI_04335 0.15 +0.6 857,201 - dgoR BNILDI_04335 0.37 +0.0 857,396 + dgoR BNILDI_04335 0.65 +0.3 857,397 - dgoR BNILDI_04335 0.65 +0.1 857,412 + dgoR BNILDI_04335 0.67 -0.0 857,413 - dgoR BNILDI_04335 0.67 +0.0 857,574 + +0.3 857,575 - -0.2 857,575 - +0.3 857,606 - +0.1 857,658 + +0.4 857,658 + -0.7 857,670 + +0.8 857,670 + +0.8 857,671 - +0.1 857,671 - -0.1 857,671 - +0.6 857,692 - -0.6 857,875 + -1.8
Or see this region's nucleotide sequence