Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhgE and pckA are separated by 378 nucleotides pckA and envZ are separated by 75 nucleotides
BNILDI_02680: yhgE - Uncharacterized protein YhgE, at 507,524 to 509,248
yhgE
BNILDI_02685: pckA - phosphoenolpyruvate carboxykinase (ATP), at 509,627 to 511,249
pckA
BNILDI_02690: envZ - two-component system sensor histidine kinase EnvZ, at 511,325 to 512,677
envZ
Position (kb) 509
510
511
512 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 508.682 kb on + strand, within yhgE at 508.682 kb on + strand, within yhgE at 508.683 kb on - strand, within yhgE at 508.683 kb on - strand, within yhgE at 508.683 kb on - strand, within yhgE at 508.683 kb on - strand, within yhgE at 508.687 kb on + strand, within yhgE at 508.687 kb on + strand, within yhgE at 508.687 kb on + strand, within yhgE at 508.688 kb on - strand, within yhgE at 508.688 kb on - strand, within yhgE at 508.688 kb on - strand, within yhgE at 508.688 kb on - strand, within yhgE at 508.692 kb on + strand, within yhgE at 508.693 kb on - strand, within yhgE at 508.693 kb on - strand, within yhgE at 508.696 kb on + strand, within yhgE at 508.696 kb on + strand, within yhgE at 508.697 kb on - strand, within yhgE at 508.769 kb on + strand, within yhgE at 508.933 kb on - strand, within yhgE at 508.998 kb on - strand, within yhgE at 509.026 kb on + strand, within yhgE at 509.173 kb on - strand at 509.251 kb on + strand at 509.251 kb on + strand at 509.252 kb on - strand at 509.300 kb on + strand at 509.300 kb on + strand at 509.300 kb on + strand at 509.300 kb on + strand at 509.352 kb on - strand at 509.421 kb on - strand at 509.544 kb on + strand at 509.550 kb on + strand at 509.551 kb on - strand at 509.588 kb on + strand at 509.602 kb on + strand at 509.602 kb on + strand at 509.602 kb on + strand at 509.603 kb on - strand at 509.603 kb on - strand at 509.603 kb on - strand at 509.603 kb on - strand at 509.603 kb on - strand at 509.607 kb on - strand at 509.614 kb on - strand at 509.669 kb on + strand at 509.670 kb on - strand at 509.685 kb on + strand at 509.685 kb on + strand at 509.685 kb on + strand at 509.686 kb on - strand at 509.686 kb on - strand at 509.686 kb on - strand at 509.686 kb on - strand at 509.686 kb on - strand at 509.686 kb on - strand at 509.772 kb on + strand at 509.772 kb on + strand at 509.772 kb on + strand at 509.773 kb on - strand at 509.776 kb on + strand at 509.833 kb on + strand, within pckA at 509.834 kb on - strand, within pckA at 509.837 kb on + strand, within pckA at 509.837 kb on + strand, within pckA at 509.838 kb on - strand, within pckA at 509.838 kb on - strand, within pckA at 509.838 kb on - strand, within pckA at 509.838 kb on - strand, within pckA at 509.840 kb on - strand, within pckA at 509.897 kb on - strand, within pckA at 509.942 kb on - strand, within pckA at 510.083 kb on - strand, within pckA at 510.205 kb on + strand, within pckA at 510.246 kb on - strand, within pckA at 510.288 kb on - strand, within pckA at 510.317 kb on - strand, within pckA at 510.317 kb on - strand, within pckA at 510.317 kb on - strand, within pckA at 510.317 kb on - strand, within pckA at 510.527 kb on + strand, within pckA at 510.528 kb on - strand, within pckA at 510.641 kb on + strand, within pckA at 510.642 kb on - strand, within pckA at 510.697 kb on + strand, within pckA at 510.903 kb on + strand, within pckA at 510.910 kb on + strand, within pckA at 510.911 kb on - strand, within pckA at 510.989 kb on - strand, within pckA at 510.989 kb on - strand, within pckA at 511.061 kb on - strand, within pckA at 511.124 kb on + strand at 511.124 kb on + strand at 511.125 kb on - strand at 511.193 kb on - strand at 511.197 kb on - strand at 511.268 kb on + strand at 511.269 kb on - strand at 511.269 kb on - strand at 511.273 kb on - strand at 511.280 kb on - strand at 511.286 kb on + strand at 511.287 kb on - strand at 511.287 kb on - strand at 511.287 kb on - strand at 511.528 kb on + strand, within envZ at 511.528 kb on + strand, within envZ at 511.528 kb on + strand, within envZ at 511.529 kb on - strand, within envZ at 511.529 kb on - strand, within envZ at 511.529 kb on - strand, within envZ at 511.529 kb on - strand, within envZ at 511.529 kb on - strand, within envZ at 511.774 kb on + strand, within envZ at 511.775 kb on - strand, within envZ at 511.884 kb on + strand, within envZ at 511.885 kb on - strand, within envZ at 511.955 kb on + strand, within envZ at 511.997 kb on - strand, within envZ at 512.012 kb on - strand, within envZ at 512.143 kb on + strand, within envZ at 512.143 kb on + strand, within envZ at 512.177 kb on - strand, within envZ at 512.189 kb on - strand, within envZ
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 508,682 + yhgE BNILDI_02680 0.67 +0.5 508,682 + yhgE BNILDI_02680 0.67 +0.4 508,683 - yhgE BNILDI_02680 0.67 -2.8 508,683 - yhgE BNILDI_02680 0.67 +2.1 508,683 - yhgE BNILDI_02680 0.67 -0.5 508,683 - yhgE BNILDI_02680 0.67 -0.2 508,687 + yhgE BNILDI_02680 0.67 +0.6 508,687 + yhgE BNILDI_02680 0.67 +1.2 508,687 + yhgE BNILDI_02680 0.67 -1.0 508,688 - yhgE BNILDI_02680 0.67 -0.2 508,688 - yhgE BNILDI_02680 0.67 +0.1 508,688 - yhgE BNILDI_02680 0.67 -0.5 508,688 - yhgE BNILDI_02680 0.67 -0.1 508,692 + yhgE BNILDI_02680 0.68 +0.6 508,693 - yhgE BNILDI_02680 0.68 +0.0 508,693 - yhgE BNILDI_02680 0.68 -0.2 508,696 + yhgE BNILDI_02680 0.68 +0.3 508,696 + yhgE BNILDI_02680 0.68 +0.0 508,697 - yhgE BNILDI_02680 0.68 -0.2 508,769 + yhgE BNILDI_02680 0.72 -1.0 508,933 - yhgE BNILDI_02680 0.82 -0.7 508,998 - yhgE BNILDI_02680 0.85 -0.4 509,026 + yhgE BNILDI_02680 0.87 -0.6 509,173 - -0.7 509,251 + -0.3 509,251 + +0.1 509,252 - -0.1 509,300 + -0.1 509,300 + +0.5 509,300 + -0.6 509,300 + -0.1 509,352 - +1.1 509,421 - +0.2 509,544 + +0.2 509,550 + -1.0 509,551 - -0.1 509,588 + +0.1 509,602 + +0.6 509,602 + -0.2 509,602 + +0.1 509,603 - -1.5 509,603 - +0.9 509,603 - +0.4 509,603 - -0.2 509,603 - +0.2 509,607 - +1.2 509,614 - +0.3 509,669 + -0.7 509,670 - +0.1 509,685 + +0.8 509,685 + -0.2 509,685 + -1.1 509,686 - -0.1 509,686 - -0.2 509,686 - -0.0 509,686 - +0.5 509,686 - -2.4 509,686 - +0.0 509,772 + -1.4 509,772 + +0.8 509,772 + -1.1 509,773 - +0.0 509,776 + +1.4 509,833 + pckA BNILDI_02685 0.13 +1.0 509,834 - pckA BNILDI_02685 0.13 +1.5 509,837 + pckA BNILDI_02685 0.13 +0.6 509,837 + pckA BNILDI_02685 0.13 -1.2 509,838 - pckA BNILDI_02685 0.13 +0.1 509,838 - pckA BNILDI_02685 0.13 -0.1 509,838 - pckA BNILDI_02685 0.13 +0.0 509,838 - pckA BNILDI_02685 0.13 +0.1 509,840 - pckA BNILDI_02685 0.13 -0.1 509,897 - pckA BNILDI_02685 0.17 +0.3 509,942 - pckA BNILDI_02685 0.19 -0.8 510,083 - pckA BNILDI_02685 0.28 +0.1 510,205 + pckA BNILDI_02685 0.36 +0.3 510,246 - pckA BNILDI_02685 0.38 -1.6 510,288 - pckA BNILDI_02685 0.41 +0.1 510,317 - pckA BNILDI_02685 0.43 +0.0 510,317 - pckA BNILDI_02685 0.43 +0.6 510,317 - pckA BNILDI_02685 0.43 +0.4 510,317 - pckA BNILDI_02685 0.43 +0.2 510,527 + pckA BNILDI_02685 0.55 -0.7 510,528 - pckA BNILDI_02685 0.56 +0.3 510,641 + pckA BNILDI_02685 0.62 -0.5 510,642 - pckA BNILDI_02685 0.63 -0.4 510,697 + pckA BNILDI_02685 0.66 +0.3 510,903 + pckA BNILDI_02685 0.79 +0.7 510,910 + pckA BNILDI_02685 0.79 +0.1 510,911 - pckA BNILDI_02685 0.79 -0.7 510,989 - pckA BNILDI_02685 0.84 -1.2 510,989 - pckA BNILDI_02685 0.84 +0.1 511,061 - pckA BNILDI_02685 0.88 +0.3 511,124 + -2.3 511,124 + -0.1 511,125 - +0.3 511,193 - -0.3 511,197 - +0.3 511,268 + +0.9 511,269 - -0.5 511,269 - -0.1 511,273 - +0.6 511,280 - +0.6 511,286 + +0.2 511,287 - +0.0 511,287 - +0.4 511,287 - -2.7 511,528 + envZ BNILDI_02690 0.15 -0.0 511,528 + envZ BNILDI_02690 0.15 -0.1 511,528 + envZ BNILDI_02690 0.15 -0.2 511,529 - envZ BNILDI_02690 0.15 -2.9 511,529 - envZ BNILDI_02690 0.15 -0.7 511,529 - envZ BNILDI_02690 0.15 -2.1 511,529 - envZ BNILDI_02690 0.15 +0.2 511,529 - envZ BNILDI_02690 0.15 -3.0 511,774 + envZ BNILDI_02690 0.33 -1.1 511,775 - envZ BNILDI_02690 0.33 -0.3 511,884 + envZ BNILDI_02690 0.41 -0.6 511,885 - envZ BNILDI_02690 0.41 -0.7 511,955 + envZ BNILDI_02690 0.47 +0.2 511,997 - envZ BNILDI_02690 0.50 -0.3 512,012 - envZ BNILDI_02690 0.51 -0.2 512,143 + envZ BNILDI_02690 0.60 +0.2 512,143 + envZ BNILDI_02690 0.60 -1.4 512,177 - envZ BNILDI_02690 0.63 +0.3 512,189 - envZ BNILDI_02690 0.64 -0.0
Or see this region's nucleotide sequence