Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sspA and rpsI are separated by 394 nucleotides rpsI and rplM are separated by 15 nucleotides rplM and zapE are separated by 218 nucleotides
BNILDI_01905: sspA - stringent starvation protein A, at 374,130 to 374,768
sspA
BNILDI_01910: rpsI - 30S ribosomal protein S9, at 375,163 to 375,555
rpsI
BNILDI_01915: rplM - 50S ribosomal protein L13, at 375,571 to 375,999
rplM
BNILDI_01920: zapE - cell division protein ZapE, at 376,218 to 377,345
zapE
Position (kb) 375
376 Strain fitness (log2 ratio) -2
-1
0
1
2 at 374.210 kb on + strand, within sspA at 374.210 kb on + strand, within sspA at 374.211 kb on - strand, within sspA at 374.438 kb on - strand, within sspA at 374.537 kb on - strand, within sspA at 374.667 kb on + strand, within sspA at 374.707 kb on + strand at 374.707 kb on + strand at 374.707 kb on + strand at 374.707 kb on + strand at 374.707 kb on + strand at 374.708 kb on - strand at 374.708 kb on - strand at 374.708 kb on - strand at 374.708 kb on - strand at 374.708 kb on - strand at 374.708 kb on - strand at 374.783 kb on - strand at 374.783 kb on - strand at 374.783 kb on - strand at 374.920 kb on + strand at 374.920 kb on + strand at 374.988 kb on - strand at 374.997 kb on + strand at 374.998 kb on - strand at 374.998 kb on - strand at 375.006 kb on + strand at 375.007 kb on - strand at 376.024 kb on - strand at 376.246 kb on + strand at 376.319 kb on - strand at 376.328 kb on - strand at 376.394 kb on + strand, within zapE at 376.430 kb on + strand, within zapE at 376.430 kb on + strand, within zapE at 376.437 kb on + strand, within zapE at 376.438 kb on - strand, within zapE at 376.483 kb on + strand, within zapE at 376.484 kb on - strand, within zapE at 376.484 kb on - strand, within zapE at 376.484 kb on - strand, within zapE at 376.517 kb on + strand, within zapE at 376.517 kb on + strand, within zapE at 376.518 kb on - strand, within zapE at 376.521 kb on - strand, within zapE
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 374,210 + sspA BNILDI_01905 0.13 +0.4 374,210 + sspA BNILDI_01905 0.13 +0.7 374,211 - sspA BNILDI_01905 0.13 +0.2 374,438 - sspA BNILDI_01905 0.48 +2.5 374,537 - sspA BNILDI_01905 0.64 +0.8 374,667 + sspA BNILDI_01905 0.84 +0.4 374,707 + +0.6 374,707 + +1.3 374,707 + +1.2 374,707 + +0.6 374,707 + +2.5 374,708 - +0.3 374,708 - +0.5 374,708 - +0.3 374,708 - -1.5 374,708 - -0.5 374,708 - +0.9 374,783 - +1.1 374,783 - +0.0 374,783 - +1.0 374,920 + +0.5 374,920 + +0.7 374,988 - +0.3 374,997 + +0.1 374,998 - -0.2 374,998 - +0.1 375,006 + +2.0 375,007 - +0.0 376,024 - -0.8 376,246 + -0.1 376,319 - -2.2 376,328 - -0.6 376,394 + zapE BNILDI_01920 0.16 -1.4 376,430 + zapE BNILDI_01920 0.19 -1.0 376,430 + zapE BNILDI_01920 0.19 -0.7 376,437 + zapE BNILDI_01920 0.19 +0.7 376,438 - zapE BNILDI_01920 0.20 -0.2 376,483 + zapE BNILDI_01920 0.23 +2.5 376,484 - zapE BNILDI_01920 0.24 -1.1 376,484 - zapE BNILDI_01920 0.24 +0.2 376,484 - zapE BNILDI_01920 0.24 -0.4 376,517 + zapE BNILDI_01920 0.27 -0.4 376,517 + zapE BNILDI_01920 0.27 -1.7 376,518 - zapE BNILDI_01920 0.27 +1.1 376,521 - zapE BNILDI_01920 0.27 +0.9
Or see this region's nucleotide sequence