Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arcB and yhcC are separated by 95 nucleotides yhcC and gltB are separated by 581 nucleotides
BNILDI_01840: arcB - aerobic respiration two-component sensor histidine kinase ArcB, at 355,063 to 357,399
arcB
BNILDI_01845: yhcC - TIGR01212 family radical SAM protein, at 357,495 to 358,424
yhcC
BNILDI_01850: gltB - glutamate synthase large subunit, at 359,006 to 363,559
gltB
Position (kb) 357
358
359 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 356.930 kb on - strand, within arcB at 357.076 kb on + strand, within arcB at 357.188 kb on + strand at 357.189 kb on - strand at 357.234 kb on + strand at 357.287 kb on - strand at 357.368 kb on + strand at 357.368 kb on + strand at 357.368 kb on + strand at 357.369 kb on - strand at 357.369 kb on - strand at 357.369 kb on - strand at 357.369 kb on - strand at 357.451 kb on + strand at 357.451 kb on + strand at 357.452 kb on - strand at 357.452 kb on - strand at 357.458 kb on + strand at 357.459 kb on - strand at 357.541 kb on - strand at 357.672 kb on - strand, within yhcC at 357.704 kb on - strand, within yhcC at 357.756 kb on - strand, within yhcC at 357.774 kb on - strand, within yhcC at 357.774 kb on - strand, within yhcC at 357.793 kb on - strand, within yhcC at 357.793 kb on - strand, within yhcC at 357.874 kb on - strand, within yhcC at 357.874 kb on - strand, within yhcC at 357.874 kb on - strand, within yhcC at 357.874 kb on - strand, within yhcC at 357.874 kb on - strand, within yhcC at 357.920 kb on + strand, within yhcC at 357.921 kb on - strand, within yhcC at 357.987 kb on + strand, within yhcC at 358.026 kb on - strand, within yhcC at 358.097 kb on + strand, within yhcC at 358.123 kb on + strand, within yhcC at 358.124 kb on - strand, within yhcC at 358.127 kb on + strand, within yhcC at 358.163 kb on + strand, within yhcC at 358.186 kb on + strand, within yhcC at 358.280 kb on + strand, within yhcC at 358.311 kb on - strand, within yhcC at 358.355 kb on + strand at 358.356 kb on - strand at 358.401 kb on - strand at 358.718 kb on + strand at 359.005 kb on + strand at 359.006 kb on - strand at 359.099 kb on - strand at 359.099 kb on - strand at 359.105 kb on + strand at 359.157 kb on + strand at 359.157 kb on + strand at 359.158 kb on - strand at 359.158 kb on - strand at 359.170 kb on + strand at 359.170 kb on + strand at 359.170 kb on + strand at 359.170 kb on + strand at 359.181 kb on + strand at 359.181 kb on + strand at 359.196 kb on + strand at 359.197 kb on - strand at 359.197 kb on - strand at 359.355 kb on + strand at 359.356 kb on - strand at 359.356 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 356,930 - arcB BNILDI_01840 0.80 +0.4 357,076 + arcB BNILDI_01840 0.86 +1.7 357,188 + -1.0 357,189 - -0.1 357,234 + +2.2 357,287 - +0.1 357,368 + +1.4 357,368 + +0.9 357,368 + +1.3 357,369 - -2.5 357,369 - -2.3 357,369 - +0.2 357,369 - +2.8 357,451 + +0.7 357,451 + +0.7 357,452 - -2.9 357,452 - +2.0 357,458 + -0.2 357,459 - +0.2 357,541 - +1.3 357,672 - yhcC BNILDI_01845 0.19 -0.8 357,704 - yhcC BNILDI_01845 0.22 +1.7 357,756 - yhcC BNILDI_01845 0.28 -0.6 357,774 - yhcC BNILDI_01845 0.30 +0.5 357,774 - yhcC BNILDI_01845 0.30 -0.3 357,793 - yhcC BNILDI_01845 0.32 +0.0 357,793 - yhcC BNILDI_01845 0.32 +0.0 357,874 - yhcC BNILDI_01845 0.41 +1.4 357,874 - yhcC BNILDI_01845 0.41 -1.1 357,874 - yhcC BNILDI_01845 0.41 -1.4 357,874 - yhcC BNILDI_01845 0.41 +1.2 357,874 - yhcC BNILDI_01845 0.41 -0.2 357,920 + yhcC BNILDI_01845 0.46 -0.1 357,921 - yhcC BNILDI_01845 0.46 +1.3 357,987 + yhcC BNILDI_01845 0.53 -0.2 358,026 - yhcC BNILDI_01845 0.57 +0.9 358,097 + yhcC BNILDI_01845 0.65 +0.5 358,123 + yhcC BNILDI_01845 0.68 +0.3 358,124 - yhcC BNILDI_01845 0.68 -0.5 358,127 + yhcC BNILDI_01845 0.68 +1.1 358,163 + yhcC BNILDI_01845 0.72 -0.5 358,186 + yhcC BNILDI_01845 0.74 +0.1 358,280 + yhcC BNILDI_01845 0.84 -0.6 358,311 - yhcC BNILDI_01845 0.88 -0.1 358,355 + +0.1 358,356 - -0.1 358,401 - +0.5 358,718 + -1.2 359,005 + -0.7 359,006 - -0.8 359,099 - -0.8 359,099 - +0.3 359,105 + +0.2 359,157 + +0.4 359,157 + -0.3 359,158 - +1.2 359,158 - +0.0 359,170 + +0.1 359,170 + +1.3 359,170 + -0.1 359,170 + -1.7 359,181 + -0.1 359,181 + -0.4 359,196 + -0.1 359,197 - -2.6 359,197 - -0.3 359,355 + -1.0 359,356 - -0.9 359,356 - -1.1
Or see this region's nucleotide sequence