Strain Fitness in Escherichia coli ECRC62 around BNILDI_01360

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyhaB and BNILDI_01360 are separated by 21 nucleotidesBNILDI_01360 and BNILDI_01365 are separated by 337 nucleotides BNILDI_01355: yhaB - Uncharacterized protein YhaB, at 267,482 to 268,021 yhaB BNILDI_01360: BNILDI_01360 - YhaC family protein, at 268,043 to 269,230 _01360 BNILDI_01365: BNILDI_01365 - IS110-like element IS621 family transposase, at 269,568 to 270,548 _01365 Position (kb) 268 269 270Strain fitness (log2 ratio) -1 0 1 2at 267.254 kb on - strandat 267.384 kb on + strandat 267.563 kb on - strand, within yhaBat 268.201 kb on + strand, within BNILDI_01360at 268.417 kb on + strand, within BNILDI_01360at 268.489 kb on + strand, within BNILDI_01360at 268.500 kb on + strand, within BNILDI_01360at 268.501 kb on - strand, within BNILDI_01360at 268.501 kb on - strand, within BNILDI_01360at 268.501 kb on - strand, within BNILDI_01360at 268.715 kb on - strand, within BNILDI_01360at 268.844 kb on - strand, within BNILDI_01360at 269.195 kb on + strandat 269.380 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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267,254 - -0.2
267,384 + +0.1
267,563 - yhaB BNILDI_01355 0.15 -1.6
268,201 + BNILDI_01360 0.13 -0.2
268,417 + BNILDI_01360 0.31 +0.3
268,489 + BNILDI_01360 0.38 +0.2
268,500 + BNILDI_01360 0.38 -0.4
268,501 - BNILDI_01360 0.39 +1.9
268,501 - BNILDI_01360 0.39 +0.4
268,501 - BNILDI_01360 0.39 +0.8
268,715 - BNILDI_01360 0.57 +0.3
268,844 - BNILDI_01360 0.67 +1.0
269,195 + +0.7
269,380 - +0.1

Or see this region's nucleotide sequence