Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt exuR and yqiM are separated by 245 nucleotides yqiM and mzrA are separated by 21 nucleotides mzrA and mzrA are separated by 3 nucleotides mzrA and yqjC are separated by 146 nucleotides yqjC and yqjD are separated by 37 nucleotides
BNILDI_01225: exuR - transcriptional regulator ExuR, at 245,427 to 246,203
exuR
BNILDI_01230: yqiM - Protein YqiM, at 246,449 to 246,526
yqiM
BNILDI_01235: mzrA - EnvZ/OmpR regulon moderator MzrA, at 246,548 to 247,210
mzrA
BNILDI_01240: mzrA - EnvZ/OmpR regulon moderator MzrA, at 247,214 to 247,597
mzrA
BNILDI_01245: yqjC - Protein YqjC, at 247,744 to 248,112
yqjC
BNILDI_01250: yqjD - Uncharacterized protein YqjD, at 248,150 to 248,455
yqjD
Position (kb) 246
247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 245.569 kb on + strand, within exuR at 245.570 kb on - strand, within exuR at 245.607 kb on + strand, within exuR at 245.608 kb on - strand, within exuR at 245.681 kb on + strand, within exuR at 245.857 kb on + strand, within exuR at 245.936 kb on + strand, within exuR at 246.056 kb on + strand, within exuR at 246.100 kb on + strand, within exuR at 246.264 kb on - strand at 246.367 kb on + strand at 246.367 kb on + strand at 246.367 kb on + strand at 246.373 kb on + strand at 246.374 kb on - strand at 246.411 kb on - strand at 246.432 kb on + strand at 246.432 kb on + strand at 246.432 kb on + strand at 246.433 kb on - strand at 246.452 kb on + strand at 246.453 kb on - strand at 246.485 kb on - strand, within yqiM at 246.632 kb on + strand, within mzrA at 246.632 kb on + strand, within mzrA at 246.633 kb on - strand, within mzrA at 246.633 kb on - strand, within mzrA at 246.806 kb on + strand, within mzrA at 246.807 kb on - strand, within mzrA at 246.809 kb on - strand, within mzrA at 246.876 kb on - strand, within mzrA at 246.928 kb on - strand, within mzrA at 247.221 kb on + strand at 247.448 kb on - strand, within mzrA at 247.514 kb on + strand, within mzrA at 247.515 kb on - strand, within mzrA at 247.515 kb on - strand, within mzrA at 247.537 kb on + strand, within mzrA at 247.538 kb on - strand, within mzrA at 247.549 kb on + strand, within mzrA at 247.550 kb on - strand, within mzrA at 247.643 kb on + strand at 247.652 kb on - strand at 247.658 kb on - strand at 247.711 kb on + strand at 247.711 kb on + strand at 247.712 kb on - strand at 247.750 kb on + strand at 247.794 kb on + strand, within yqjC at 247.799 kb on - strand, within yqjC at 247.799 kb on - strand, within yqjC at 247.852 kb on + strand, within yqjC at 247.881 kb on + strand, within yqjC at 248.108 kb on - strand at 248.127 kb on + strand at 248.131 kb on + strand at 248.131 kb on + strand at 248.131 kb on + strand at 248.132 kb on - strand at 248.168 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 245,569 + exuR BNILDI_01225 0.18 -0.4 245,570 - exuR BNILDI_01225 0.18 -0.5 245,607 + exuR BNILDI_01225 0.23 -1.6 245,608 - exuR BNILDI_01225 0.23 -0.0 245,681 + exuR BNILDI_01225 0.33 +2.0 245,857 + exuR BNILDI_01225 0.55 -0.4 245,936 + exuR BNILDI_01225 0.66 +0.1 246,056 + exuR BNILDI_01225 0.81 -0.5 246,100 + exuR BNILDI_01225 0.87 +1.8 246,264 - -0.3 246,367 + -0.0 246,367 + -0.6 246,367 + +2.3 246,373 + -0.6 246,374 - -0.7 246,411 - +0.0 246,432 + -3.6 246,432 + +0.4 246,432 + -0.7 246,433 - +0.1 246,452 + +0.6 246,453 - -1.3 246,485 - yqiM BNILDI_01230 0.46 -2.0 246,632 + mzrA BNILDI_01235 0.13 +0.8 246,632 + mzrA BNILDI_01235 0.13 +0.1 246,633 - mzrA BNILDI_01235 0.13 -0.1 246,633 - mzrA BNILDI_01235 0.13 -0.1 246,806 + mzrA BNILDI_01235 0.39 +2.0 246,807 - mzrA BNILDI_01235 0.39 +0.4 246,809 - mzrA BNILDI_01235 0.39 -0.1 246,876 - mzrA BNILDI_01235 0.49 +1.3 246,928 - mzrA BNILDI_01235 0.57 -0.2 247,221 + +0.1 247,448 - mzrA BNILDI_01240 0.61 -1.1 247,514 + mzrA BNILDI_01240 0.78 +0.6 247,515 - mzrA BNILDI_01240 0.78 +1.3 247,515 - mzrA BNILDI_01240 0.78 +0.3 247,537 + mzrA BNILDI_01240 0.84 +0.2 247,538 - mzrA BNILDI_01240 0.84 -0.6 247,549 + mzrA BNILDI_01240 0.87 +2.0 247,550 - mzrA BNILDI_01240 0.88 -0.0 247,643 + -0.2 247,652 - -1.7 247,658 - -0.1 247,711 + -0.6 247,711 + -0.2 247,712 - +0.3 247,750 + -0.1 247,794 + yqjC BNILDI_01245 0.14 +1.3 247,799 - yqjC BNILDI_01245 0.15 +0.2 247,799 - yqjC BNILDI_01245 0.15 -0.1 247,852 + yqjC BNILDI_01245 0.29 -0.0 247,881 + yqjC BNILDI_01245 0.37 +0.3 248,108 - -1.7 248,127 + -0.9 248,131 + -0.2 248,131 + +1.7 248,131 + +0.4 248,132 - +0.3 248,168 - +0.1
Or see this region's nucleotide sequence