Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygiF and ygiM are separated by 241 nucleotides ygiM and cca are separated by 63 nucleotides cca and bacA are separated by 162 nucleotides
BNILDI_01005: ygiF - inorganic triphosphatase, at 193,324 to 194,625
ygiF
BNILDI_01010: ygiM - TIGR04211 family SH3 domain-containing protein, at 194,867 to 195,487
ygiM
BNILDI_01015: cca - fused tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca, at 195,551 to 196,789
cca
BNILDI_01020: bacA - undecaprenyl-diphosphate phosphatase, at 196,952 to 197,773
bacA
Position (kb) 195
196
197 Strain fitness (log2 ratio) -2
-1
0
1 at 194.592 kb on + strand at 194.598 kb on + strand at 194.632 kb on + strand at 194.633 kb on - strand at 194.633 kb on - strand at 194.633 kb on - strand at 194.636 kb on + strand at 194.644 kb on - strand at 194.644 kb on - strand at 194.652 kb on + strand at 194.652 kb on + strand at 194.653 kb on - strand at 194.653 kb on - strand at 194.675 kb on + strand at 194.697 kb on - strand at 194.700 kb on + strand at 194.701 kb on - strand at 194.703 kb on + strand at 194.704 kb on - strand at 194.828 kb on + strand at 194.829 kb on - strand at 194.832 kb on - strand at 194.892 kb on + strand at 194.965 kb on + strand, within ygiM at 195.039 kb on + strand, within ygiM at 195.042 kb on + strand, within ygiM at 195.043 kb on - strand, within ygiM at 195.065 kb on + strand, within ygiM at 195.066 kb on - strand, within ygiM at 195.066 kb on - strand, within ygiM at 195.066 kb on - strand, within ygiM at 195.122 kb on - strand, within ygiM at 195.345 kb on + strand, within ygiM at 195.345 kb on + strand, within ygiM at 195.388 kb on + strand, within ygiM at 195.388 kb on + strand, within ygiM at 195.388 kb on + strand, within ygiM at 195.388 kb on + strand, within ygiM at 195.389 kb on - strand, within ygiM at 195.392 kb on + strand, within ygiM at 195.485 kb on + strand at 195.515 kb on + strand at 195.518 kb on + strand at 196.794 kb on - strand at 196.794 kb on - strand at 196.799 kb on + strand at 196.968 kb on + strand at 196.987 kb on + strand at 196.988 kb on - strand at 197.047 kb on + strand, within bacA at 197.048 kb on - strand, within bacA at 197.081 kb on - strand, within bacA at 197.081 kb on - strand, within bacA at 197.137 kb on - strand, within bacA at 197.300 kb on - strand, within bacA at 197.320 kb on + strand, within bacA at 197.404 kb on - strand, within bacA at 197.592 kb on - strand, within bacA at 197.612 kb on + strand, within bacA at 197.677 kb on + strand, within bacA at 197.678 kb on - strand, within bacA at 197.683 kb on + strand, within bacA at 197.684 kb on - strand, within bacA at 197.684 kb on - strand, within bacA at 197.738 kb on + strand at 197.777 kb on + strand at 197.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 194,592 + -0.5 194,598 + -0.5 194,632 + -0.6 194,633 - -1.6 194,633 - +0.5 194,633 - -2.4 194,636 + -1.5 194,644 - -0.2 194,644 - +0.3 194,652 + -0.9 194,652 + -1.0 194,653 - -1.3 194,653 - +1.1 194,675 + -0.1 194,697 - -0.0 194,700 + +0.2 194,701 - +0.9 194,703 + -0.2 194,704 - -0.4 194,828 + +0.1 194,829 - +0.4 194,832 - -0.7 194,892 + -0.4 194,965 + ygiM BNILDI_01010 0.16 -1.2 195,039 + ygiM BNILDI_01010 0.28 -0.1 195,042 + ygiM BNILDI_01010 0.28 +0.2 195,043 - ygiM BNILDI_01010 0.28 -0.3 195,065 + ygiM BNILDI_01010 0.32 +0.1 195,066 - ygiM BNILDI_01010 0.32 +0.2 195,066 - ygiM BNILDI_01010 0.32 +0.1 195,066 - ygiM BNILDI_01010 0.32 -1.2 195,122 - ygiM BNILDI_01010 0.41 +0.8 195,345 + ygiM BNILDI_01010 0.77 +0.0 195,345 + ygiM BNILDI_01010 0.77 -1.2 195,388 + ygiM BNILDI_01010 0.84 +0.6 195,388 + ygiM BNILDI_01010 0.84 -0.3 195,388 + ygiM BNILDI_01010 0.84 -0.1 195,388 + ygiM BNILDI_01010 0.84 -0.2 195,389 - ygiM BNILDI_01010 0.84 +0.8 195,392 + ygiM BNILDI_01010 0.85 +0.1 195,485 + -1.1 195,515 + +0.9 195,518 + -0.4 196,794 - +0.7 196,794 - -0.6 196,799 + -1.8 196,968 + +0.1 196,987 + +0.1 196,988 - -0.6 197,047 + bacA BNILDI_01020 0.12 -0.4 197,048 - bacA BNILDI_01020 0.12 -0.3 197,081 - bacA BNILDI_01020 0.16 +0.3 197,081 - bacA BNILDI_01020 0.16 +0.1 197,137 - bacA BNILDI_01020 0.23 +0.1 197,300 - bacA BNILDI_01020 0.42 -0.1 197,320 + bacA BNILDI_01020 0.45 +0.0 197,404 - bacA BNILDI_01020 0.55 +0.1 197,592 - bacA BNILDI_01020 0.78 -0.0 197,612 + bacA BNILDI_01020 0.80 -0.1 197,677 + bacA BNILDI_01020 0.88 +0.3 197,678 - bacA BNILDI_01020 0.88 -1.7 197,683 + bacA BNILDI_01020 0.89 +1.3 197,684 - bacA BNILDI_01020 0.89 +0.2 197,684 - bacA BNILDI_01020 0.89 -0.6 197,738 + +0.0 197,777 + +0.4 197,777 + -0.1
Or see this region's nucleotide sequence