Strain Fitness in Escherichia coli ECRC62 around BNILDI_00875

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygiZ and mdaB are separated by 318 nucleotidesmdaB and ygiN are separated by 30 nucleotidesygiN and BNILDI_00880 are separated by 47 nucleotides BNILDI_00865: ygiZ - Inner membrane protein YgiZ, at 166,879 to 167,211 ygiZ BNILDI_00870: mdaB - NADPH:quinone oxidoreductase MdaB, at 167,530 to 168,111 mdaB BNILDI_00875: ygiN - putative quinol monooxygenase YgiN, at 168,142 to 168,456 ygiN BNILDI_00880: BNILDI_00880 - DNA topoisomerase 4 subunit B, at 168,504 to 170,396 _00880 Position (kb) 168 169Strain fitness (log2 ratio) -2 -1 0 1at 167.164 kb on + strand, within ygiZat 167.492 kb on + strandat 167.492 kb on + strandat 167.493 kb on - strandat 167.495 kb on + strandat 167.495 kb on + strandat 167.495 kb on + strandat 167.495 kb on + strandat 167.497 kb on + strandat 167.772 kb on + strand, within mdaBat 167.773 kb on - strand, within mdaBat 167.783 kb on + strand, within mdaBat 167.783 kb on + strand, within mdaBat 167.884 kb on + strand, within mdaBat 167.885 kb on - strand, within mdaBat 167.971 kb on + strand, within mdaBat 167.972 kb on - strand, within mdaBat 168.027 kb on + strand, within mdaBat 168.028 kb on - strand, within mdaBat 168.114 kb on - strandat 168.127 kb on + strandat 168.127 kb on + strandat 168.128 kb on - strandat 168.217 kb on - strand, within ygiNat 168.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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167,164 + ygiZ BNILDI_00865 0.86 +1.5
167,492 + -0.2
167,492 + +0.9
167,493 - +0.2
167,495 + -0.8
167,495 + +1.4
167,495 + +0.3
167,495 + +1.5
167,497 + -0.0
167,772 + mdaB BNILDI_00870 0.42 +0.2
167,773 - mdaB BNILDI_00870 0.42 +0.1
167,783 + mdaB BNILDI_00870 0.43 -0.1
167,783 + mdaB BNILDI_00870 0.43 +0.1
167,884 + mdaB BNILDI_00870 0.61 +0.4
167,885 - mdaB BNILDI_00870 0.61 +1.1
167,971 + mdaB BNILDI_00870 0.76 -0.0
167,972 - mdaB BNILDI_00870 0.76 +1.0
168,027 + mdaB BNILDI_00870 0.85 -0.0
168,028 - mdaB BNILDI_00870 0.86 +0.2
168,114 - -1.3
168,127 + -2.0
168,127 + -0.7
168,128 - +0.1
168,217 - ygiN BNILDI_00875 0.24 +0.2
168,506 - +0.5

Or see this region's nucleotide sequence