Strain Fitness in Escherichia coli ECOR38 around HEPCGN_19245

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
2,599,072	-	ygdR	HEPCGN_19235	0.68	-4.2
2,599,072	-	ygdR	HEPCGN_19235	0.68	-0.3
2,599,172	-				+1.1
2,599,175	-				+1.0
2,599,197	-				-0.1
2,599,198	+				-0.3
2,599,199	-				-0.4
2,599,199	-				-2.9
2,599,199	-				+0.3
2,599,199	-				+0.1
2,599,200	+				-0.2
2,599,248	+				-1.3
2,599,271	-				-3.3
2,599,349	+				+1.4
2,599,350	-				-0.4
2,599,355	+	ygdQ	HEPCGN_19240	0.11	+0.5
2,599,524	+	ygdQ	HEPCGN_19240	0.34	+0.5
2,599,525	-	ygdQ	HEPCGN_19240	0.34	+0.4
2,599,525	-	ygdQ	HEPCGN_19240	0.34	-3.2
2,599,581	+	ygdQ	HEPCGN_19240	0.42	+1.1
2,599,581	+	ygdQ	HEPCGN_19240	0.42	-0.9
2,599,581	+	ygdQ	HEPCGN_19240	0.42	+0.3
2,599,582	-	ygdQ	HEPCGN_19240	0.42	+0.5
2,599,582	-	ygdQ	HEPCGN_19240	0.42	-0.5
2,599,695	+	ygdQ	HEPCGN_19240	0.58	-0.7
2,599,753	+	ygdQ	HEPCGN_19240	0.66	+1.2
2,599,819	-	ygdQ	HEPCGN_19240	0.76	-0.8
2,599,902	+	ygdQ	HEPCGN_19240	0.87	+0.4
2,599,966	-				-0.5
2,599,987	+				+1.3
2,599,987	+				+0.8
2,599,988	-				+0.2
2,599,995	-				-1.3
2,600,027	+				-0.9
2,600,027	+				-1.9
2,600,028	-				+0.4
2,600,028	-				+0.0
2,600,029	+				+0.2
2,600,030	-				-0.2
2,600,116	+				+0.0
2,600,208	+	mutH	HEPCGN_19245	0.21	+1.6
2,600,209	-	mutH	HEPCGN_19245	0.21	-0.2
2,600,262	-	mutH	HEPCGN_19245	0.29	-1.4
2,600,363	+	mutH	HEPCGN_19245	0.44	+0.3
2,600,363	+	mutH	HEPCGN_19245	0.44	-0.5
2,600,364	-	mutH	HEPCGN_19245	0.44	-0.2
2,600,364	-	mutH	HEPCGN_19245	0.44	-1.0
2,600,364	-	mutH	HEPCGN_19245	0.44	-0.1
2,600,364	-	mutH	HEPCGN_19245	0.44	-2.6
2,600,441	+	mutH	HEPCGN_19245	0.55	-0.3
2,600,441	+	mutH	HEPCGN_19245	0.55	+0.7
2,600,442	-	mutH	HEPCGN_19245	0.55	-0.5
2,600,444	+	mutH	HEPCGN_19245	0.56	-0.1
2,600,555	+	mutH	HEPCGN_19245	0.72	-0.9
2,600,556	-	mutH	HEPCGN_19245	0.72	-2.6
2,600,669	+	mutH	HEPCGN_19245	0.88	+1.1
2,600,670	-	mutH	HEPCGN_19245	0.88	+0.5
2,600,698	-				-0.5
2,600,786	-				+1.8
2,600,844	-				+0.7
2,600,992	+	ygdT	HEPCGN_19250	0.38	-0.2
2,601,320	-				-0.9
2,601,351	+				-0.3
2,601,351	+				+1.1
2,601,406	+				-0.9
2,601,407	-				-1.0
2,601,407	-				-0.3
2,601,408	+				+0.6
2,601,410	+				-0.1
2,601,410	+				+0.4
2,601,410	+				+0.2
2,601,410	+				+0.1
2,601,418	+				+0.7
2,601,429	-				+2.0
2,601,467	-				+1.7
2,601,470	+				-0.0
2,601,471	-				+0.4
2,601,585	+	rppH	HEPCGN_19255	0.28	-1.9
2,601,613	+	rppH	HEPCGN_19255	0.34	-0.7
2,601,614	-	rppH	HEPCGN_19255	0.34	-1.4
2,601,664	-	rppH	HEPCGN_19255	0.43	-1.6