Strain Fitness in Escherichia coli ECOR38 around HEPCGN_15660

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
1,892,457	-				+0.1
1,892,467	+				-2.3
1,892,468	-				+0.4
1,892,471	+				+1.3
1,892,526	+				-0.4
1,892,526	+				-0.1
1,892,527	-				+0.1
1,892,659	+	yhhW	HEPCGN_15655	0.28	+1.0
1,892,660	-	yhhW	HEPCGN_15655	0.29	+0.3
1,892,673	+	yhhW	HEPCGN_15655	0.30	-0.5
1,892,674	-	yhhW	HEPCGN_15655	0.31	+1.1
1,892,674	-	yhhW	HEPCGN_15655	0.31	+0.2
1,892,674	-	yhhW	HEPCGN_15655	0.31	-0.3
1,892,771	-	yhhW	HEPCGN_15655	0.45	-0.2
1,892,804	-	yhhW	HEPCGN_15655	0.49	+0.3
1,892,838	+	yhhW	HEPCGN_15655	0.54	-0.6
1,892,873	+	yhhW	HEPCGN_15655	0.59	-0.0
1,892,948	-	yhhW	HEPCGN_15655	0.70	-0.4
1,892,948	-	yhhW	HEPCGN_15655	0.70	+0.4
1,893,225	+				+0.1
1,893,225	+				-0.8
1,893,226	-				-0.2
1,893,276	+				+0.1
1,893,276	+				-0.1
1,893,281	+				+0.2
1,893,281	+				+0.1
1,893,281	+				+0.3
1,893,282	-				-0.3
1,893,282	-				-2.2
1,893,282	-				-0.5
1,893,282	-				+0.2
1,893,283	+				+0.2
1,893,283	+				-0.1
1,893,284	-				+0.7
1,893,287	+				+0.7
1,893,347	-				+0.2
1,893,399	+				+0.2
1,893,399	+				+0.5
1,893,400	-				-1.1
1,893,423	+				-0.5
1,893,423	+				+1.0
1,893,525	-	gntR	HEPCGN_15660	0.15	+0.5
1,893,525	-	gntR	HEPCGN_15660	0.15	-0.2
1,893,527	-	gntR	HEPCGN_15660	0.15	-0.8
1,893,527	-	gntR	HEPCGN_15660	0.15	-0.9
1,893,527	-	gntR	HEPCGN_15660	0.15	-1.0
1,893,588	+	gntR	HEPCGN_15660	0.21	-0.3
1,893,763	+	gntR	HEPCGN_15660	0.38	+1.2
1,893,763	+	gntR	HEPCGN_15660	0.38	-1.0
1,893,763	+	gntR	HEPCGN_15660	0.38	+0.5
1,893,832	+	gntR	HEPCGN_15660	0.45	+0.4
1,893,833	-	gntR	HEPCGN_15660	0.45	+0.7
1,893,958	+	gntR	HEPCGN_15660	0.58	-0.8
1,893,958	+	gntR	HEPCGN_15660	0.58	-0.5
1,893,958	+	gntR	HEPCGN_15660	0.58	-0.3
1,893,958	+	gntR	HEPCGN_15660	0.58	-0.2
1,893,959	-	gntR	HEPCGN_15660	0.58	-1.1
1,893,961	+	gntR	HEPCGN_15660	0.58	+0.2
1,893,961	+	gntR	HEPCGN_15660	0.58	+0.0
1,893,961	+	gntR	HEPCGN_15660	0.58	-0.9
1,893,962	-	gntR	HEPCGN_15660	0.58	+0.6
1,894,017	-	gntR	HEPCGN_15660	0.64	-1.3
1,894,018	+	gntR	HEPCGN_15660	0.64	-0.7
1,894,018	+	gntR	HEPCGN_15660	0.64	-0.5
1,894,018	+	gntR	HEPCGN_15660	0.64	-2.5
1,894,018	+	gntR	HEPCGN_15660	0.64	-0.9
1,894,018	+	gntR	HEPCGN_15660	0.64	-0.3
1,894,018	+	gntR	HEPCGN_15660	0.64	+0.8
1,894,019	-	gntR	HEPCGN_15660	0.64	-0.5
1,894,046	+	gntR	HEPCGN_15660	0.67	-0.1
1,894,114	+	gntR	HEPCGN_15660	0.74	-1.2
1,894,115	-	gntR	HEPCGN_15660	0.74	-0.0
1,894,117	+	gntR	HEPCGN_15660	0.74	+0.8
1,894,341	+				-0.2
1,894,373	+				-0.7
1,894,373	+				+0.4
1,894,403	+				+1.1
1,894,404	-				-0.0
1,894,404	-				+0.6
1,894,412	-				-3.4
1,894,438	+				+0.5
1,894,496	+				+1.3
1,894,544	+				-0.2
1,894,545	-				-1.7
1,894,545	-				-1.4
1,894,545	-				-0.3
1,894,806	+	gntK	HEPCGN_15665	0.55	-0.3
1,894,965	+	gntK	HEPCGN_15665	0.85	-0.9
1,894,965	+	gntK	HEPCGN_15665	0.85	-1.9
1,894,966	-	gntK	HEPCGN_15665	0.86	-0.6
1,895,023	+				-2.8
1,895,024	-				-0.4
1,895,039	+				-0.3
1,895,039	+				+0.1
1,895,040	-				-0.1
1,895,040	-				+0.3
1,895,044	-				+0.2
1,895,050	+				-1.4
1,895,120	-				+0.0
1,895,120	-				+0.9
1,895,280	+	gntU	HEPCGN_15670	0.18	+0.5
1,895,280	+	gntU	HEPCGN_15670	0.18	-0.4
1,895,281	-	gntU	HEPCGN_15670	0.18	-0.8
1,895,281	-	gntU	HEPCGN_15670	0.18	-0.3
1,895,351	+	gntU	HEPCGN_15670	0.23	+0.8