Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_08760 and araC are separated by 513 nucleotides araC and araB are separated by 338 nucleotides
HEPCGN_08760: HEPCGN_08760 - hypothetical protein, at 491,383 to 492,231
_08760
HEPCGN_08765: araC - arabinose operon transcriptional regulator AraC, at 492,745 to 493,590
araC
HEPCGN_08770: araB - ribulokinase, at 493,929 to 495,629
araB
Position (kb) 492
493
494 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 491.843 kb on + strand, within HEPCGN_08760 at 491.898 kb on - strand, within HEPCGN_08760 at 491.898 kb on - strand, within HEPCGN_08760 at 491.903 kb on - strand, within HEPCGN_08760 at 491.920 kb on + strand, within HEPCGN_08760 at 491.921 kb on - strand, within HEPCGN_08760 at 491.956 kb on - strand, within HEPCGN_08760 at 492.256 kb on + strand at 492.266 kb on - strand at 492.396 kb on + strand at 492.397 kb on - strand at 492.458 kb on - strand at 492.504 kb on - strand at 492.504 kb on - strand at 492.676 kb on + strand at 492.696 kb on - strand at 492.744 kb on - strand at 492.747 kb on - strand at 492.894 kb on + strand, within araC at 492.895 kb on - strand, within araC at 492.919 kb on + strand, within araC at 493.037 kb on + strand, within araC at 493.266 kb on + strand, within araC at 493.347 kb on - strand, within araC at 493.347 kb on - strand, within araC at 493.380 kb on + strand, within araC at 493.380 kb on + strand, within araC at 493.456 kb on - strand, within araC at 493.458 kb on - strand, within araC at 493.523 kb on - strand at 493.591 kb on - strand at 493.705 kb on + strand at 493.708 kb on + strand at 493.708 kb on + strand at 493.708 kb on + strand at 493.709 kb on - strand at 493.771 kb on + strand at 493.771 kb on + strand at 494.021 kb on - strand at 494.097 kb on + strand at 494.190 kb on - strand, within araB at 494.190 kb on - strand, within araB at 494.278 kb on + strand, within araB at 494.279 kb on - strand, within araB at 494.329 kb on + strand, within araB at 494.364 kb on + strand, within araB at 494.364 kb on + strand, within araB at 494.366 kb on + strand, within araB at 494.379 kb on + strand, within araB at 494.546 kb on + strand, within araB at 494.546 kb on + strand, within araB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 491,843 + HEPCGN_08760 0.54 -1.6 491,898 - HEPCGN_08760 0.61 -0.1 491,898 - HEPCGN_08760 0.61 +0.6 491,903 - HEPCGN_08760 0.61 -0.0 491,920 + HEPCGN_08760 0.63 +0.3 491,921 - HEPCGN_08760 0.63 +0.5 491,956 - HEPCGN_08760 0.67 -0.1 492,256 + +0.7 492,266 - +0.4 492,396 + +0.1 492,397 - -0.0 492,458 - +0.4 492,504 - +0.6 492,504 - +0.2 492,676 + -0.1 492,696 - +0.5 492,744 - +0.4 492,747 - +0.2 492,894 + araC HEPCGN_08765 0.18 -0.1 492,895 - araC HEPCGN_08765 0.18 -0.9 492,919 + araC HEPCGN_08765 0.21 +0.4 493,037 + araC HEPCGN_08765 0.35 +0.6 493,266 + araC HEPCGN_08765 0.62 -1.3 493,347 - araC HEPCGN_08765 0.71 +0.3 493,347 - araC HEPCGN_08765 0.71 -0.3 493,380 + araC HEPCGN_08765 0.75 +3.0 493,380 + araC HEPCGN_08765 0.75 -1.9 493,456 - araC HEPCGN_08765 0.84 -2.2 493,458 - araC HEPCGN_08765 0.84 +0.9 493,523 - +0.4 493,591 - +0.7 493,705 + +0.0 493,708 + +0.6 493,708 + -0.1 493,708 + -1.2 493,709 - -3.1 493,771 + -0.5 493,771 + -0.2 494,021 - +0.2 494,097 + +0.3 494,190 - araB HEPCGN_08770 0.15 -4.4 494,190 - araB HEPCGN_08770 0.15 -0.4 494,278 + araB HEPCGN_08770 0.21 -0.7 494,279 - araB HEPCGN_08770 0.21 -1.0 494,329 + araB HEPCGN_08770 0.24 +0.7 494,364 + araB HEPCGN_08770 0.26 -1.1 494,364 + araB HEPCGN_08770 0.26 -0.5 494,366 + araB HEPCGN_08770 0.26 -0.1 494,379 + araB HEPCGN_08770 0.26 -0.3 494,546 + araB HEPCGN_08770 0.36 +0.7 494,546 + araB HEPCGN_08770 0.36 +0.5
Or see this region's nucleotide sequence