Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tilS and yaeR are separated by 64 nucleotides yaeR and ldcC are separated by 56 nucleotides ldcC and accA are separated by 98 nucleotides
HEPCGN_08070: tilS - tRNA lysidine(34) synthetase TilS, at 346,563 to 347,861
tilS
HEPCGN_08075: yaeR - VOC family protein, at 347,926 to 348,315
yaeR
HEPCGN_08080: ldcC - lysine decarboxylase LdcC, at 348,372 to 350,513
ldcC
HEPCGN_08085: accA - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 350,612 to 351,571
accA
Position (kb) 348
349
350
351 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 347.880 kb on + strand at 347.927 kb on + strand at 347.936 kb on + strand at 347.937 kb on - strand at 347.993 kb on + strand, within yaeR at 348.155 kb on + strand, within yaeR at 348.207 kb on - strand, within yaeR at 348.245 kb on + strand, within yaeR at 348.280 kb on - strand at 348.304 kb on + strand at 348.305 kb on - strand at 348.305 kb on - strand at 348.315 kb on + strand at 348.327 kb on + strand at 348.328 kb on - strand at 348.457 kb on + strand at 348.572 kb on + strand at 348.630 kb on - strand, within ldcC at 348.719 kb on + strand, within ldcC at 348.719 kb on + strand, within ldcC at 348.758 kb on + strand, within ldcC at 348.765 kb on - strand, within ldcC at 348.765 kb on - strand, within ldcC at 348.809 kb on + strand, within ldcC at 348.867 kb on + strand, within ldcC at 348.868 kb on - strand, within ldcC at 348.900 kb on - strand, within ldcC at 348.939 kb on + strand, within ldcC at 348.942 kb on + strand, within ldcC at 348.942 kb on + strand, within ldcC at 348.942 kb on + strand, within ldcC at 349.325 kb on + strand, within ldcC at 349.325 kb on + strand, within ldcC at 349.325 kb on + strand, within ldcC at 349.334 kb on + strand, within ldcC at 349.335 kb on - strand, within ldcC at 349.335 kb on - strand, within ldcC at 349.373 kb on + strand, within ldcC at 349.478 kb on + strand, within ldcC at 349.487 kb on - strand, within ldcC at 349.487 kb on - strand, within ldcC at 349.591 kb on + strand, within ldcC at 349.591 kb on + strand, within ldcC at 349.592 kb on - strand, within ldcC at 349.743 kb on + strand, within ldcC at 349.743 kb on + strand, within ldcC at 349.743 kb on + strand, within ldcC at 349.759 kb on - strand, within ldcC at 349.805 kb on + strand, within ldcC at 349.825 kb on + strand, within ldcC at 349.826 kb on - strand, within ldcC at 349.830 kb on - strand, within ldcC at 349.871 kb on + strand, within ldcC at 349.871 kb on + strand, within ldcC at 349.873 kb on + strand, within ldcC at 349.873 kb on + strand, within ldcC at 349.906 kb on + strand, within ldcC at 349.971 kb on - strand, within ldcC at 349.971 kb on - strand, within ldcC at 349.985 kb on + strand, within ldcC at 349.992 kb on - strand, within ldcC at 350.041 kb on + strand, within ldcC at 350.057 kb on + strand, within ldcC at 350.069 kb on + strand, within ldcC at 350.102 kb on + strand, within ldcC at 350.129 kb on + strand, within ldcC at 350.129 kb on + strand, within ldcC at 350.135 kb on + strand, within ldcC at 350.135 kb on + strand, within ldcC at 350.143 kb on + strand, within ldcC at 350.144 kb on - strand, within ldcC at 350.155 kb on + strand, within ldcC at 350.200 kb on + strand, within ldcC at 350.287 kb on + strand, within ldcC at 350.295 kb on - strand, within ldcC at 350.295 kb on - strand, within ldcC at 350.316 kb on + strand at 350.330 kb on - strand at 350.330 kb on - strand at 350.414 kb on + strand at 350.540 kb on - strand at 350.546 kb on - strand at 350.614 kb on - strand at 350.626 kb on - strand at 350.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 347,880 + -0.1 347,927 + +0.1 347,936 + +0.2 347,937 - +1.0 347,993 + yaeR HEPCGN_08075 0.17 +1.0 348,155 + yaeR HEPCGN_08075 0.59 +1.0 348,207 - yaeR HEPCGN_08075 0.72 +0.1 348,245 + yaeR HEPCGN_08075 0.82 -2.8 348,280 - +0.3 348,304 + +0.2 348,305 - +1.7 348,305 - -0.5 348,315 + +0.7 348,327 + +1.4 348,328 - -1.1 348,457 + -0.4 348,572 + +0.5 348,630 - ldcC HEPCGN_08080 0.12 -0.3 348,719 + ldcC HEPCGN_08080 0.16 +0.3 348,719 + ldcC HEPCGN_08080 0.16 +0.5 348,758 + ldcC HEPCGN_08080 0.18 -0.4 348,765 - ldcC HEPCGN_08080 0.18 +0.5 348,765 - ldcC HEPCGN_08080 0.18 +0.5 348,809 + ldcC HEPCGN_08080 0.20 +1.5 348,867 + ldcC HEPCGN_08080 0.23 +0.4 348,868 - ldcC HEPCGN_08080 0.23 +0.2 348,900 - ldcC HEPCGN_08080 0.25 +3.7 348,939 + ldcC HEPCGN_08080 0.26 +0.2 348,942 + ldcC HEPCGN_08080 0.27 -0.6 348,942 + ldcC HEPCGN_08080 0.27 +1.4 348,942 + ldcC HEPCGN_08080 0.27 +0.6 349,325 + ldcC HEPCGN_08080 0.44 +0.3 349,325 + ldcC HEPCGN_08080 0.44 +1.0 349,325 + ldcC HEPCGN_08080 0.44 +0.1 349,334 + ldcC HEPCGN_08080 0.45 +1.2 349,335 - ldcC HEPCGN_08080 0.45 +0.4 349,335 - ldcC HEPCGN_08080 0.45 +0.2 349,373 + ldcC HEPCGN_08080 0.47 +0.1 349,478 + ldcC HEPCGN_08080 0.52 +0.0 349,487 - ldcC HEPCGN_08080 0.52 -0.8 349,487 - ldcC HEPCGN_08080 0.52 -2.0 349,591 + ldcC HEPCGN_08080 0.57 +0.3 349,591 + ldcC HEPCGN_08080 0.57 +0.0 349,592 - ldcC HEPCGN_08080 0.57 +0.4 349,743 + ldcC HEPCGN_08080 0.64 -0.4 349,743 + ldcC HEPCGN_08080 0.64 +0.7 349,743 + ldcC HEPCGN_08080 0.64 -0.1 349,759 - ldcC HEPCGN_08080 0.65 +0.9 349,805 + ldcC HEPCGN_08080 0.67 +1.5 349,825 + ldcC HEPCGN_08080 0.68 +0.1 349,826 - ldcC HEPCGN_08080 0.68 -1.5 349,830 - ldcC HEPCGN_08080 0.68 +0.3 349,871 + ldcC HEPCGN_08080 0.70 +0.6 349,871 + ldcC HEPCGN_08080 0.70 +0.5 349,873 + ldcC HEPCGN_08080 0.70 -0.6 349,873 + ldcC HEPCGN_08080 0.70 -0.3 349,906 + ldcC HEPCGN_08080 0.72 +0.3 349,971 - ldcC HEPCGN_08080 0.75 -1.0 349,971 - ldcC HEPCGN_08080 0.75 -0.3 349,985 + ldcC HEPCGN_08080 0.75 -0.9 349,992 - ldcC HEPCGN_08080 0.76 -2.5 350,041 + ldcC HEPCGN_08080 0.78 +0.1 350,057 + ldcC HEPCGN_08080 0.79 -0.4 350,069 + ldcC HEPCGN_08080 0.79 -0.1 350,102 + ldcC HEPCGN_08080 0.81 +0.7 350,129 + ldcC HEPCGN_08080 0.82 +0.0 350,129 + ldcC HEPCGN_08080 0.82 +1.0 350,135 + ldcC HEPCGN_08080 0.82 +0.8 350,135 + ldcC HEPCGN_08080 0.82 +0.4 350,143 + ldcC HEPCGN_08080 0.83 -0.6 350,144 - ldcC HEPCGN_08080 0.83 -0.5 350,155 + ldcC HEPCGN_08080 0.83 +0.7 350,200 + ldcC HEPCGN_08080 0.85 +0.6 350,287 + ldcC HEPCGN_08080 0.89 -0.6 350,295 - ldcC HEPCGN_08080 0.90 +1.6 350,295 - ldcC HEPCGN_08080 0.90 -0.4 350,316 + +0.2 350,330 - +0.4 350,330 - -0.6 350,414 + -1.5 350,540 - +1.0 350,546 - +0.9 350,614 - +0.1 350,626 - -0.1 350,626 - -0.5
Or see this region's nucleotide sequence